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rmd13's Projects

cellpose-fiji icon cellpose-fiji

ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.

changefiletimeps icon changefiletimeps

A property page shell extension that allows modifying the file timestamps (legacy project)

chinawareblock icon chinawareblock

国产流氓、娱乐软件和不受欢迎的软件屏蔽工具

chinesepassportphotomaker icon chinesepassportphotomaker

About This is a simple C# WPF program on Windows (maybe one day cross-platform?) to make standard Chinese (CHN) passport photo.

chrysalis icon chrysalis

Image processing for static images and movies to expedite image analysis.

chrysalis-1 icon chrysalis-1

Image processing software and Imaris Xtensions that expedite histo-cytometry analysis of 3D images and movies.

clarinet icon clarinet

Electrophysiology time series data analysis

clatlab icon clatlab

GPU-accelerated image processing in Matlab using CLIJ

cld icon cld

A software for the multispecies design of CRISPR/Cas9 libraries

clearmap icon clearmap

ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.

clearmap2 icon clearmap2

ClearMap 2.0 with WobblyStitcher, TubeMap and CellMap

cluster-analysis-toolkit icon cluster-analysis-toolkit

A toolkit of cluster analysis for fluorescence images using Image Correlation Spectroscopy (ICS), K-means, cluster modeling using Imaris, etc.

cmmfile icon cmmfile

Exchange binary files between C++, Mathematica and Matlab

condalab icon condalab

MATLAB utility to switch between Anaconda environments

connected-components-3d icon connected-components-3d

Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants.

corefreq icon corefreq

CoreFreq is a CPU monitoring software designed for the 64-bits Processors.

crabsort icon crabsort

🦀🦀🦀 Sort spikes from extra-cellular recordings using neural networks. Fully automated.

create-spots-from-text icon create-spots-from-text

Creates an Imaris spots object from x,y,z-positions in a CSV file. The spots size is determined by the user. Positions must be within the image boundary, for example, no negative values. Additionally, the extension assumes three lines of header information in the CSV file, therefore the first three lines will be skipped.

cvbi icon cvbi

Github repository for imaging analysis in python + Imaris

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