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rmd13's Projects

bfautofocus icon bfautofocus

a Micro-Manager plugin to find physical cell z-focus plane with transmitted-light microscopy images

bigstitcher icon bigstitcher

ImgLib2/BDV implementation of Stitching for large datasets

bimocq icon bimocq

Efficient and Conservative Fluids Using Bidirectional Mapping

bioformats icon bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

bioimaging icon bioimaging

Monte Carlo simulation toolkit for bioimaging systems

birds_reg icon birds_reg

The registration part of birds, which is the registration plug-in of the FiJi platform, can be linked with imaris

bitlash icon bitlash

Bitlash: a programmable command shell for arduino

bm_3d-qm icon bm_3d-qm

Code used in the publication https://www.nature.com/articles/s41467-018-04770-z

brain2mesh icon brain2mesh

Brain2Mesh - a one-liner for high-quality brain mesh generation

brainstorm3 icon brainstorm3

Brainstorm software: MEG, EEG, fNIRS, ECoG, sEEG and electrophysiology

brian2 icon brian2

Brian is a free, open source simulator for spiking neural networks.

camelyon icon camelyon

The solution to cameyon16 and camelyon17 challenge and also to your own WSI data project.

camicroscope icon camicroscope

Digital pathology image viewer with support for human/machine generated annotations and markups.

captura icon captura

Capture Screen, Audio, Cursor, Mouse Clicks and Keystrokes

cellfinder icon cellfinder

Automated 3D cell detection and registration of whole-brain images

cellpose icon cellpose

a generalist algorithm for cellular segmentation

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