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attachi-cli

barcode-creation

Scripts to create barcodes for tagging samples

barcode-dragon-portlet

cookiecutter-templates-cli

Collection of cookiecutter templates to generate new portlets, libraries, utilities, etc., using our parent POM structure.

core-utils-lib

Library containing core classes and utilities that are independent of a portal.

crispr-cas9_regorafenib_2024

data-download-server

data-manager-app

A web-based life science omics and imaging data management solution

data-manager-app-design-system

data-model-lib

Libraries providing functionality for the QBiC/openBIS data model

data-processing

QBiC's post-upload server-side logic to prepare datasets for registration

dm-onthology-owl-2-json

Resolves an OWL resource and writes into JSON for further services

dm-onthology-terms

Loading onthology terms from OWL notations into ORM databases

docs

Technical documentation about QBiC-related projects

dropboxhandler

dropboxreporter

Reports stuff that has happened on a particular day, based on the logs.

dync-cli

TCP-based python data transfer client and server using ZeroMQ

etl-scripts

ETL scripts written in Jython 2.7 for openBIS dropboxes.

example-osgi-library

example-osgi-portlet

experiment-creation-portlet

Prototype of new experiment creation and import portlet

experiment-graph-gui

Stand alone version of the d3 experiment graph

experimental-design-lib

Parsers, writers for experimental design formats etc.

fairy-data-provider

A humble effort to expose datasets in a FAIR way using Schema.org and Bioschemas.org

geo-uploader-cli

Extracts data from openBIS and (semi-)automizes the data upload

groovydoc-maven-plugin

Maven plugin to allow for inclusion of Gmavenplus generated Groovydocs in project-reports.html

html2pdf-cli

html2pdf. A proof-of-concept HTML to PDF conversion tool.

icgc-features

ipspine-input-portlet

Portlet to input experiment and measurement information for the open-access knowledge platform

isa-creator-lib

ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran, David Johnson and Philippe Rocca-Serra (Uni. of Oxford).