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metastats-cli

Creates a metadata table for an openBIS project for statistical analysis

metastats-object-model

Describes the properties of a QBiC MetaStats object model

micronaut-utils-lib

A small util library for shared objects in Micronaut-based projects at QBiC.

mtb-converter-cli

A Python command line tool that parses and converts diagnostic variant data for the Molecular Tumor Board at UKT Tübingen.

mtb-parser-lib

A simple module for diagnostic variant information parsing

nanopore-parser-cli

A command-line application for validating Oxford Nanopore folder structures.

ncct-style

nextflow-logger-service

Consumes Nextflow weblog payloads via Http REST and stores them in a database.

offer-manager-2-portlet

The offer manager assists in creating offers with version control and person master data handling.

omero-importer-cli

A description how to build a slim JAVA omero-importer CLI, without installing OMERO.server

omero-importer-recipe

Conda recipe for the Java omero importer cli

omero-lib

Java-based library to connect to the OMERO server

omero-portlet

Vaadin portlet for qPortal that displays image (meta)data.

omero-py-lib

Python bindings for OMERO server API 5.4.6

openbis-client-lib

openbis_connection_tester

Small portlet to test connection problems

parent-poms

We keep all parent POMs under this single repository.

pipeline-docs

Docs for QBiC pipelines

portal-utils-lib

Liferay and Vaadin utilities that are quite handy to have when doing portal development.

postman-cli

A client software for dataset request and download from openBIS

postman-core-lib

Core libraries providing utilities for the download of OpenBIS files and datasets

power-analysis-portlet

Support power analysis and sample size estimation of DNA microarray and RNA-Seq experimental designs

printer-garden-portlet

Maintaining and updating printer project associations and label printer locations

project-manager

project-manager-portlet

A project manager portlet

projectbrowser-portlet

QBiC Project Browser enables users to browse and manage their projects. Further, users can run analysis pipelines on registered data.

projectwizard-portlet

QBiC Project Wizard enables users to create hierarchical experiments including different study conditions using factorial design.

qbic-docs

QBiC technical documentation, such as API docs.

qbic-pipeline-integration-testing

A repository to hold the code used for pipeline integration testing for nf-core/rnaseq and scilifelab/Sarek at QBIC.

qbic-portlet-userdbtools

The existing portlet https://github.com/qbicsoftware/UserDBTools is migrated to our portlet-templaet structure based on maven.