qbicsoftware / data-download-server Goto Github PK

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4. See error

Expected behavior
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Additional context
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Is your feature request related to a problem? Please describe.

Projects with many samples can produce a large amount of data in one measurement.
To analyse effects only observed in a subset of the generated data, a download of the whole measurement leads to a download containing all files. Many of the files are not of interest for the problem analysis. Problems could be data corruption or data quality issues.
Issues could occur during muliplexed runs where only a subset is of interest.

Describe the solution you'd like
As files of interest are known beforehand, a filter for a part of the filename would help to only download files of interest.

Describe alternatives you've considered
@qbicStefanC any ideas?

Additional context

---
title: Example
---
flowchart LR
   s1("sample 1") --> sequencer 
   s2("sample 2") --> sequencer 
   s3("sample 3") --> sequencer 
   sequencer --> multi_out("multiplexed output (BCL)")
   multi_out --> demultiplex("de-multiplexing")
   demultiplex --> o11("2020-01-01_sample_1_L001.fastq.gz")
   demultiplex --> o12("2020-01-01_sample_1_L002.fastq.gz")
   demultiplex -- "error" --> o13("2020-01-01_sample_1_L003.fastq.gz")
   demultiplex --> o21("2020-01-01_sample_2_L001.fastq.gz")
   demultiplex --> o22("2020-01-01_sample_2_L002.fastq.gz")
   demultiplex --error--> o23("2020-01-01_sample_2_L003.fastq.gz")
   demultiplex --> o31("2020-01-01_sample_3_L001.fastq.gz")
   demultiplex --> o32("2020-01-01_sample_3_L002.fastq.gz")
   demultiplex --error--> o33("2020-01-01_sample_3_L003.fastq.gz")