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biostar-tutorials

Code for biostar tutorials - mostly R and Perl

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biostar-tutorials's Issues

hgu133ahsentrezgcdf

Warning message:
package ‘hgu133ahsentrezgcdf’ is not available (for R version 3.5.0)

Arranging the rows and columns of the heat map

Hi,

I am using heatmap.3() to plot a graph. Even though I use scale = "none" and dendrogram = "none". It is automatically reordering them. I understand this has something to do with the hclustfun. I cannot plot without providing a value for the parameter. Do you know how I can define the hclust() function such that I keeps the original ordering of the cells.

Thanks!

heatmap.3 breaks when colsep contains 0

If the colsep parameter is a vector containing 0, running heatmap.3 gives the following error message:

 Error in rect(xleft = csep + 0.5, ybottom = rep(0, length(csep)), xright = csep +  :
  cannot mix zero-length and non-zero-length coordinates

Setting ybottom = 0 in heatmap.3.R:345 seems to make it work.

(The rowsep parameter is not affected.)

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