Name: Barry Digby
Type: User
Bio: Repositories of a fledgling nextflow user.
Location: Galway
Currently a member of Dr. Pilib Ò Broin's lab at National University of Ireland, Galway.
Research interests clinical data analysis, development of reproducible bioinformatics pipelines, containerisation and nextflow scripting. Extracurricular interests include developing and delivering workshops on NGS data analysis, providing consulting services for pipeline automation.
ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
barrydigby
barrydigby.github.io
MA5112 MSc Biomedical Genomics
bioconda-recipes
Conda recipes for the bioconda channel.
biostar-tutorials
Code for biostar tutorials - mostly R and Perl
bmc-genomics-review
bmc_circrna
nf-core BMC software article
branch_protection
capice
circ
nf-circ test repo
circ_data
minimal tar release
circrna
nf-core/circrna dev
circrna-detection
Scripts, documentation and results for the Bachelor Thesis "Analysis of Circular RNAs As miRNA Sponges".
circrna_finder
dockerfile for circRNA finder Westholm et al.
circrna_finder-1
Pipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).
circrna_original
Nextflow pipeline to scan high throughput sequencing data for circRNAs, perform differential expression and generate circRNA-miRNA targets
circrna_simu
Simulate PE RNA-Seq data containing circRNAs derived from glioblastoma samples.
circtcga
Scan TCGA sequencing data for circRNAs
ciriquant
circular RNA quantification tools
ciriquant_v1.0.1
cloud_cix
Documentation for baby clouds
cnci
Coding-Non-Coding Index (CNCI)
configs
Config files used to define parameters specific to compute environments at different Institutions
containers
Bioinformatics containers
crt_workshop
d-o-connor
data-science-for-life-science
CRT outreach program to assist life scientists in learning basic data science skills.
dcc
dietrich et al, DCC tool....
dnaseq_references
enrichplot
Visualization of Functional Enrichment Result
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
