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transabyss

de novo assembly of RNA-seq data using ABySS

tutorials-1

Tutorials on phylogenomic analyses for the ForBio Phylogenomics course

varid_analysis

VarID analysis of murine hematopoietic progenitors and intestinal epithelial cells. VarID is part of RaceID v0.1.4

vast-tools-nf

A Nextflow Implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data

ventral-parafacial-neuron-scrnaseq

scRNA-seq analysis code to accompany Cleary et. al, 2020.

vhost-classifier

For a list of taxon IDs, VHost-Classifier will filter out the viruses and then sort these viruses into groups based on their host lineage.

vifi

Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.

viral-mutation

Language modeling of viral evolution

viral-ngs

Viral genomics analysis pipelines

virmet

Set of tools for viral metagenomics.

virus_orf_finder

A web app based on shiny, DECIPHER, NCBI ORFfinder and BLAST

virusfishing

Virusfishing is a virus screening pipeline for 1000 Insect Transcriptome Evolution (1KITE) project to search viruses, construct viral genomes and screen for the expressed virus genes and discover viral splicing patterns. Virusfishing also can be used in other next generation sequencing data.

vorffinder2.0

weblog

wes-mapping-bwa-gatk

Map and post-process your bams for SNP calling

whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level

xmatchview

🗻 Visualization of genome/gene sequence synteny

yamp

YAMP: Yet Another Metagenomic Pipeline

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