nailouzhang Goto Github PK

ncov

Nextstrain build for novel coronavirus (nCoV)

nextflow_assembly

nf-core-virome

nf-gwas-pipeline

A Nextflow Genome-Wide Association Study (GWAS) Pipeline

nichenetr

NicheNet: predict active ligand-target links between interacting cells

notes

java/Linux/Windows/macOS notes

ntedit

✏️ultra fast and scalable genome assembly polishing

ntlink

Assembly scaffolder using long reads and minimizers

pancanatlas_code_public

Public repository containing research code for the TCGA PanCanAtlas Splicing project

paramsa

Using uncertainty in multiple sequence alignments for phylogenetic trees and bootstrap support values

pavfinder

:mag: Post Assembly Variants Finder

pdac-tumorigenesis-scatac

Analysis of scATAC-seq data from early pancreatic cancer initiation.

pipeline

This is the implementation of the Pipeline analysis designed by Dr Michelle Carey and Dr Hulin Wu, currently maintained by Dr Juan C. Ramírez.

popdiff_monocyteiav

Repository associated with the following manuscript: Basal Expression of Interferon-Stimulated Genes Drives Population Differences in Monocyte Susceptibility to Influenza Infection

predictf

psupertime

psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels

rmats-nf

A pipeline to retrieve RNA sequencing data from SRA, perform alignment with hisat2 and characterize splicing events with rMATS 3.2.5.

rna-scoop

:shipit: interactive visualization of single-cell transcriptomes

rna-seq-splicing-analysis-pipeline

Computational biology pipeline that quantifies RNA splicing and performs sQTL mapping

rnafusion

RNA-seq analysis pipeline for detection gene-fusions

rnaseq_kajal_2020

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

sars-cov-2-leader

sars-cov-2-rbd_dms

Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike

sars-cov-2-transcriptome

Supplemental code for "the architecture of SARS-CoV-2 transcriptome" paper

sars2_rbd_ab_escape_maps

Interactive visualization of deep mutational scanning maps of mutations to SARS-CoV-2 RBD that escape antibody or sera binding

sarsr-cov_homolog_survey

Survey of ACE2 binding specificities among SARS-related CoV homologs

scaling_law

Scripts needed to reproduce Baeza-Centurion et al. 2019

scell_lung_adenocarcinoma

This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset

scmappr

the scMappR developmental package