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2020_ips_lung_differentiation

Reproducibility repo accompanying Chaido Ori, Meshal Ansari, Ilias Angelidis, Fabian J. Theis, Herbert B. Schiller and Micha Drukker "Single cell trajectory mapping of human pluripotent stem cells differentiating towards lung and hepatocyte progenitors".

5years

altanalyze

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

analysisscripts

A motley collection of scripts used for analysis of high-throughput sequencing data

analyze-unmapped-reads

This script is used for the analysis of unmapped reads from next generation sequencing (NGS) data.

annotatevariants

This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions for software installs.

arcashla

Fast and accurate in silico inference of HLA genotypes from RNA-seq

armt

arriba

Fast and accurate gene fusion detection from RNA-Seq data

as_analysis_myeloid_neoplasms

This repository contains the scripts used for the 2020 paper "Complex landscapes of alternative splicing in myeloid neoplasms"

assemblage

A Bioinformatics toolkit to assemble and annotate bacterial genomes.

atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

atrtd2-de-das-dtu-pipeline

auto-asm

snakemake long read assembly pipeline

autodock-gpu

AutoDock for GPUs and other accelerators

awesome-alternative-splicing

Alternative splicing resource

awesome-bioinformatics-benchmarks

A curated list of bioinformatics bench-marking papers and resources.

awesome-reproducible-research

A curated list of reproducible research case studies, projects, tutorials, and media

awosome-bioinformatics

A curated list of resources for learning bioinformatics.

bcl2fastq-nf

WORK IN PROGRESS: Nextflow pipeline to run bcl2fastq to convert BCL files to FASTQ

bohra

A pipeline for bioinformatics analysis of bacterial genomes

cafe_fig

A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)

ccrcc

Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinoma

cellrank_notebooks

Tutorials and figures for CellRank

cnki-pdf-download

直接下载知网硕博文献PDF版本

coessentiality

Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)

cov-irt

Pipelines and scripts used to processed data related to COVID-19

covariants

Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

covid19splicing

Betacoronavirus splicing analysis

covid_meta_analysis

Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics"