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orthofinder-tools's Issues

Failed to extract description for strain=CerAGI:

I ran your specified command with all the required parameters but recieved an error when executed.
I've listed the command and the error which I got while running it.

$ annotate_orthogroups --orthogroups_tsv /home/shivank/Results_Aug23/Phylogenetic_Hierarchical_Orthogroups/N0.tsv --hog True --fasta_dir /home/shivank/protein/ --file_endings faa --out /home/shivank/outfile.tsv --simple True
AssertionError: Failed to extract description for strain=CerAGI:
gene.id=jgi|CerAGI|462322|estExt_Genewise1.C_1_t10001
gene.description=jgi|CerAGI|462322|estExt_Genewise1.C_1_t10001
description=['jgi|CerAGI|462322|estExt_Genewise1.C_1_t10001']

What is the input fasta file format?

I used orthofinder-tools but my fasta file sequence name only have one field like '>gene-001', so the error occured

Failed to extract description for strain=G1

I changed the fasta dir file sequence name and orthogroups.tsv, but it showed

  File "/mnt/f/ortho/orthogroup_to_genename.py", line 106, in <listcomp>
    lambda ids: [gene_id_to_name[id] for id in ids])
KeyError: ''

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