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abri-annotate

Run ABRicate using multiple reference databases and maps the results onto genes

bacterial_genome_assembly

Bacterial genome assembly

binaryfilesearch

biojs-vis-blasterjs

BlasterJS - an open source JS library to display Blast results

brickopore

Blocksford Brickopore LEGOseq 2000

brickoporegui

GUI for Blocksford Brickopore

cached-contingency

Compute and cache Fisher's exact test and Boschloo's test more efficiently!

campus-cloud-unibe-uploader

Upload single files to campuscloud.unibe.ch with this simple bash script!

dnafeaturesviewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

dot

Dot: An interactive dot plot viewer for comparative genomics. Uses mummer / mummer4 to generate dotplots.

fast-fisher

A fast, precise, pure Python implementation of Fisher's exact test

flower-plot

A Python function that makes flower plots.

frantic-rules

Simple website to quickly browse the rules of the Frantic card game: https://rulefactory.ch/frantic/

gendiscalpy

Python bindings to GenDisCal and addition of phylogenetic tree function

gene-loci-comparison

Create fancy (bokeh) gene locus plots from GenBank files!

get-tax-info

Convert NCBI TaxIDs to scientific species names and vice-versa

gnome-clipboard-history

Gnome Clipboard History is a Gnome extension that saves what you've copied into an easily accessible, searchable history panel.

jquery-tageditor

A powerful and lightweight tag editor plugin for jQuery.

kegg-map-wizard

Downloads pathway maps from KEGG, creates Python obejcts, converts them into SVG, allows processing in modern browsers.

mgwas-data-exploration-app

Data exploration app for large phenotypic datasets analyzed using mGWAS, originally developed for Scoary2

ncbi-blast

Simple Python wrapper for NCBI Blast.

nf-core-modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

openfortivpn_cookie_extractor

Get SVPNCOOKIE from Firefox and start openfortivpn

orthofinder

Phylogenetic orthology inference for comparative genomics

orthofinder-tools

Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to roary_plots

pclrc

pypdf

A pure-python PDF library capable of splitting, merging, cropping, and transforming the pages of PDF files

scoary

Pan-genome wide association studies

scoary-2

Calculate assocations between genes and traits