mattoslmp Goto Github PK

16s-itgdb

An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.

add-tax-pred_metagenome_contrib_picrust2

ahrd

High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.

alphafold

Open source code for AlphaFold.

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

aminoacid-cost-of-protein

genomic analysis

ancom

R scripts for Analysis of Composition of Microbiomes (ANCOM).

annie

annie = ANNotation Information Extractor

annotation-genome-graphics

R scripts for genome annotation graphs

antismash

antiSMASH

aop-ontology

Adverse Outcome Pathway Ontology

applied-ml

📚 Papers & tech blogs by companies sharing their work on data science & machine learning in production.

awesome-ai-based-protein-design

A collection of research papers for AI-based protein design

bagel4

basemod-3.0

bgcpred

BGC class abudance training and prediction

big-scape

Similarity networks of biosynthetic gene clusters

bigslice

A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data

bio-app

bioautomated

Automated machine learning for analyzing, interpreting, and designing biological sequences

biodata

All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")

bioinformatics_pipeline_with_snakemake_2019-06-27

Intro to snakemake for bioinformatics - WestGrid Research Computing Summer School 2019 - University of British Columbia

bionavi-np

Biosynthesis Navigator for Natural Products

cancer-transcriptomics

carveme

CarveMe: genome-scale metabolic model reconstruction

chemblast

Find similar molecules using Sequence BLAST algorithm

chemspiderapi

R functionalites for ChemSpider's new API services

clusterfinder

Predicting biosynthetic gene clusters in genomes

clusterprofiler

:bar_chart: A universal enrichment tool for interpreting omics data

cobrapy

COBRApy is a package for constraint-based modeling of metabolic networks.