mmesbahu Goto Github PK

rawdata

rcnvmap

Project to create map of rare CNVs

rdocumentation

Integrate R with http://www.Rdocumentation.org

readdepth

R package for inferring copy number from read depth

rstan

RStan, the R interface to Stan

rtutorials

Short R talks and tutorials

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

samblaster

samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.

scikit-learn-videos

IPython notebooks from the scikit-learn video series

scipy-lecture-notes

Tutorial material on the scientific Python ecosystem

scripttoolbox

Toolbox of utility genomics scripts

sds

R code to compute the Singleton Density Score (SDS)

selectiontools

Pipeline to take VCF through to Selection Analysis.

semester-biology

seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

seqtk

Toolkit for processing sequences in FASTA/Q formats

shiny

Easy interactive web applications with R

signature

simgwas-paper

calculations run for our simGWAS (intended) paper

slurm

Slurm: A Highly Scalable Workload Manager

smtpred

SMTpred is a program which combines SNP effects or individual scores from multiple traits according to their sample size, SNP-heritability (h2) and genetic correlation (rG), in order to create more accurate polygenic risk scores.

sniffles

Structural variation caller using third generation sequencing

somatic_variant

Variant calling to identify Clonal hematopoiesis mutation

splitthreader

Explore rearrangements and copy-number amplifications in a cancer genome

sra-tools

SRA Tools

stan

Stan development repository (home page is linked below). The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.

stanford-tensorflow-tutorials

This repository contains code examples for the Stanford's course: TensorFlow for Deep Learning Research.

statgenomebook

Statistical Methods for Whole Genome Analyses

svclassify

Hemang Parikh

svelter

Approach to identify simple and complex structural genomic rearrangements using a randomized approach