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preaml

Code accompanying Prediction of AML risk in healthy individuals by Abelson, Collord, et al. (2018), Nature, 559:400-404

prefersim

programming_in_c

public

Public documents for the Master of Data Science program at the University of British Columbia

pubmedwordcloud

PubMed Word Clouds

pypath

python module for signaling pathways analysis accompanying OmniPath

pypop

Python for Population Genomics

pysnptools

A Python library for reading and manipulating genetic data.

python-glmnet

A python port of the glmnet package for fitting generalized linear models via penalized maximum likelihood.

pyucsc

Python API to UCSC genome browser tables

pyvcf

A Variant Call Format reader for Python.

qgg

Statistical tools for Quantitative Genetic Analyses

qqman

R code for creating Manhattan plots and Q-Q plots for GWAS

qvalue

R package to estimate q-values and false discovery rate quantities.

r-package

This is Quandl's R Package

raptr-sv

RAPTR-SV uses Read Pair and Split Read methods to identify structural variants in paired-end WGS data

rawdata

rcnvmap

Project to create map of rare CNVs

rdocumentation

Integrate R with http://www.Rdocumentation.org

readdepth

R package for inferring copy number from read depth

rstan

RStan, the R interface to Stan

rtutorials

Short R talks and tutorials

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

samblaster

samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.

scikit-learn-videos

IPython notebooks from the scikit-learn video series

scipy-lecture-notes

Tutorial material on the scientific Python ecosystem

scripttoolbox

Toolbox of utility genomics scripts

sds

R code to compute the Singleton Density Score (SDS)

selectiontools

Pipeline to take VCF through to Selection Analysis.

semester-biology