Comments (6)
ziw-liu
commented on June 21, 2024
1
Now implemented as czbiohub-sf/iohub#31.
We can keep this issue until iohub is released and used by recOrder, and waveorder.io can be removed from waveorder v1.0.0.
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ziw-liu
commented on June 21, 2024
It's possible that napari-ome-zarr throws KeyError: 'Row_0/Col_0/0/0/.zarray' because it expects a newer version of OME-NGFF format. Taking a look at its source, it does not use the fmt: Format = FormatV04 option of ome-zarr.reader.Reader:
https://github.com/ome/napari-ome-zarr/blob/1d423d21a76b6cda8f5feb2b7292ace96df708ae/napari_ome_zarr/_reader.py#L33-L35
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ziw-liu
commented on June 21, 2024
Possibly introduced in:
0.2.0 | 2021-03-29 | Change chunk dimension separator to "/"
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ziw-liu
commented on June 21, 2024
Taking a look at its source, it does not use the
fmt: Format = FormatV04option ofome-zarr.reader.Reader
First line of the traceback indicates the problem:
18:06:35 WARNING version mismatch: detected: FormatV01, requested: FormatV04
While ome-zarr-py should be capable of reading data in earlier OME-NGFF versions, napari-ome-zarr does not utilize this feature.
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ziw-liu
commented on June 21, 2024
Related: ome/napari-ome-zarr#39
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talonchandler
commented on June 21, 2024
iohub has been released, so this is fixed. Closing.
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