Removing I/O module about waveorder HOT 5 CLOSED

napari and matplotlib might also live in the [examples] requirements.

Matplotlib is used in the visual module though.

from waveorder.

Good point!

When I wrote that I had the waveorder/examples folder in mind. Many (all?) of the examples depend on WaveorderReader, so we'll need to handle those somehow.

Is it okay to keep iohub as a dependency so that we can demonstrate the library with the examples folder?

from waveorder.

I'm not too worried about not specifying the dependency for examples in the package setup. We are not doing it now: jupyter is not a dependency, and many examples are notebooks. Optional [examples] requirement or a line in the example's README file should be enough.

from waveorder.

Okay sounds good, I'm happy with dropping the explicit iohub dependency in waveorder and having both an [examples] requirement and a line in examples/README.md.

napari and matplotlib(Edit: we need it for visual) might also live in the [examples] requirements.

from waveorder.

Closing this. I/O has been completely removed from waveorder, and (opposite of what I though above) none of the examples need to depend on iohub.

The small of amount of io is via .npz files and matplotlib.

from waveorder.