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bed2genes

Small python package to map bed peaks to genes

benchmarkcorrelation

Simple benchmark for correlation matrix

bioinput

A JavaScript library to quickly and easily implement an autocomplete html input element for various biological entities.

biojupies

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

biojupies-cluster

biojupies-plugins

User-submitted RNA-seq data analysis tools for BioJupies.

bionetbay-

BioNetBay: Repository for Molecular Networks

biotoolbay

biotoolbay_data_collection

biotoolstory

blitzgsea

Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for accurate p-value estimation.

ccle_clustergrammer

Visualize CCLE gene expression data using Clustergrammer.

cfde_gene_pages

Common Fund Gene Landing Pages as a Dashboard

cftools

Common Fund Tools Signature Commons

charon

API to allow user upload to S3 without amazon credentials

chdgram

chdir

The Characteristic Direction

chea

ChIP-X Enrichment Analysis

chea3

Transcription Factor Regulon Enrichment Analysis

chea3web

chiphandlr

R package for annotating bed files

cite-d-lite

Chrome Extension for creating data citations directly on GEO, PubMed, and DataMed web pages.

clustergrammer

An interactive heatmap visualization built using D3.js

clustergrammer-blitz

Presentation for Postdoc Data Blitz 2016 by Nicolas Fernandez.

clustergrammer-docs

The documentation for the Clustergrammer project

clustergrammer-js

The front-end JavaScript source code for clustergrammer.js, part of the clustergrammer matrix visualization project.

clustergrammer-json

This repo documents the visualization JSON format required for the front-end clustergrammer visualization.

clustergrammer-py

A python module for the clustergrammer matrix visualization project that creates the JSON object for the front-end JavaScript portion of Clustergrammer.

clustergrammer-web

Create a clustergram visualization from a user defined network in tsv format.

clustergrammer-widget

The Clustergrammer interactive Jupyter notebook widget