Benchmark Correlation
A suit of benchmark tools to check the correctness of a gene-gene correlation matrix. The benchmark includes the following tests:
-
test gene identifier
- are all gene identifieres known
- are they homogeneous (e.g. only ensembl IDs) ior mixed (e.g. ensemble ID and gene symbol)
- detect organism (human, mouse)
- detect duplicates
-
test symmetry
- test dimensions
- test if matrix is symmetric
-
test known correlations
- test whether known correlations are preserved
-
test prediction power
- calculate AUCs for gene-set predictions
Support modules
- Load gene sets from Enrichr
- load biomart gene information / identifier mappings
- Gene-function prediction