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Haroon Kalam's Projects

uvp icon uvp

Mycobacterium tuberculosis next generation sequence analysis

uwot icon uwot

An R package implementing the UMAP dimensionality reduction method.

viralrecon icon viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

vortex icon vortex

VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:

wishbone icon wishbone

Wishbone is an algorithm to align cells along developmental trajectories with branches

xgboost icon xgboost

Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Flink and DataFlow

zumis icon zumis

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

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