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intro-to-r

intrototextanalyticswithr

Public repo for the Data Science Dojo YouTube tutorial series "Introduction to Text Analytics with R".

kallisto

Near-optimal RNA-Seq quantification

kallistobustools

kallisto|bustools workflow for pre-processing single-cell RNA-seq data

kb_python

A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing

keras

Deep Learning library for Python. Runs on TensorFlow, Theano, or CNTK.

labs

Scripts for HarvardX courses: PH525x

maaper

Model-based analysis of APA using 3' end-linked reads

machine-learning-course

:speech_balloon: Machine Learning Course with Python

maestro

Single-cell Transcriptome and Regulome Analysis Pipeline

mast

Tools and methods for analysis of single cell assay data in R

maxfuse

meetup

meta-proteome-analyzer

Automatically exported from code.google.com/p/meta-proteome-analyzer

metage2metabo

From annotated genomes to metabolic screening in large scale microbiotas

metagem

An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

mhc_tensorflow

Machine Learning for MHC I peptide classification

microbecensus

MicrobeCensus estimates the average genome size of microbial communities from metagenomic data

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

miso

MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation

mistyr

Multiview Intercellular SpaTial modeling framework

modelselection

Tutorial on model assessment, model selection and inference after model selection

monocle-release

mothur

Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.

mtbseq_source

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

mxnet

Lightweight, Portable, Flexible Distributed/Mobile Deep Learning with Dynamic, Mutation-aware Dataflow Dep Scheduler; for Python, R, Julia, Go, and more

mykrobe

Antibiotic resistance prediction in minutes

nanogpt

The simplest, fastest repository for training/finetuning medium-sized GPTs.

nichenetr

NicheNet: predict active ligand-target links between interacting cells