genomicsnx Goto Github PK

microarraypipeline

MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data

microbiomeexplorer

The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or through a Shiny application. Written by Janina Reeder and Joseph N. Paulson.

microscope

ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

mirge3.0

Comprehensive analysis of small RNA sequencing data

mirgff3

GFF3 format with miRNA and isomiR information from sequencing data

mirna

microRNA profiling pipeline

mirna_pipeline_for_miranalyzer

A pipeline of miRNA by using miRanalyzer

mirna_processing

Scripts to process miRNA from trimming through annotation.

miso

MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation

mkdocs

Project documentation with Markdown.

ml-course-notes

🎓 Sharing course notes on all topics related to machine learning, NLP, and AI.

ml-for-beginners

12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all

ml-notebooks

Some machine learning notebooks

ml-workshop-1-of-4

Introduction to Machine learning with Python, 4h interactive workshop

ml_dl_microarrays

Here, we describe the comparison of the most used algorithms in classical ML and DL to classify carcinogenic tumors described on 11_tumor data base, obtaining accuracies between 76.97% and 100% for tumor identification. Our results bring up a more efficient an accurate classification method based on gene expression (microarray data) and ML/DL algorithms, which facilitates the prediction of the tumor type from a multiple cancer types scenario

ml_purity

mlcourse.ai

Open Machine Learning Course

mquad

Tool for modelling of mitochondrial heteroplasmy

mrna_meth_decon

msnbase

Base Classes and Functions for Mass Spectrometry and Proteomics

msproteomicstools

Some hopefully useful tools for mass spectrometry applied to proteomics

mucnv

multi-omics-cancer-benchmark

multiassayworkshop

Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment

multiomics-single-cell-t1d

Supplementary code for paper

multivariate

PCA, PLS(-DA), and OPLS(-DA)

music

Multi-subject Single Cell Deconvolution

mutpanningv2

This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause open source license.

muts-needle-plot

A needle plot for mutation data