genomicsnx / msnbase Goto Github PK

MSnbase is an R/Bioconductor package that provides infrastructure for plotting, data manipulation and processing mass spectrometry and proteomics data. The project was started by Laurent Gatto in October 2010 (Mon Oct 4 23:35:23 2010, according to the git log) and has, since then, benefited from various contributions.

The official page is the Bioconductor landing page (release or devel versions). The github page page is for sharing, testing, issue tracking and forking/pulling purposes. The Bioconductor svn server, is the official repository for the working source code.

To install MSnbase

library("BiocInstaller")
biocLite("MSnbase")

If you need the github version (not recommended unless you know what you are doing)

biocLite("lgatto/MSnbase")

General questions should be asked on the Bioconductor support forum, using MSnbase to tag the question. Feel also free to open a GitHub issue.

To cite the MSnbase package in publications, please use:

Gatto L, Lilley KS. MSnbase - an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation. Bioinformatics. 2012 Jan 15;28(2):288-9. doi:10.1093/bioinformatics/btr645. PubMed PMID:22113085.

Contributions to the package are more than welcome. If you want to contribute to this package, you should follow the same conventions as the rest of the functions whenever it makes sense to do so. Feel free to get in touch (preferable opening a github issue) to discuss any suggestions. The MSnbase development vignette gives some background on the class infrastructure.

Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.