The file wigs.py currently sits under brca-exchange/website/django/ path, when it should be under brca-exchange/website/django/brca/ otherwise there is some initialization errors.

@strbean , would you look into setting up two developer sandboxes, one for yourself and one for @zfisch ? Feel free to use Brian for guidance, and if you find yourself stuck in need of some sort of resource, let me know and I'll look into getting you unstuck. Thanks!

Right now affiliations / roles are stored as a text column in the database, and if a user selects Other, the text can be anything. This makes working with them unnecessarily difficult.

Enumerate roles, use a Django Choice field in the user model, and add an other_role field for custom text.

1. Change Affiliation to Role
2. Add Patient / Proband to the top of the list

Reorder the elements on the page:

1. Intro text
2. Map
3. "We Support..."
4. Buttons
5. Search
6. People

Submitters need to have a clear understanding that any non-PHI data submitted to BRCA Exchange can and will be accessed by site users. This includes users who download data, for example to import it into separate repos.

Deadline: 6/23

convert_tsv_to_vcf.py produces vcf files that indicate GRCh37 in all cases. It needs a parameter to indicate the actual genome assembly.

Right now it reads:
"Just type in box above and use auto-complete to search for BRCA1 or BRCA2 variants. For more information about the BRCA1 and BRCA2 genes, genetic variation, and cancer, please click the About link at the top of the page."

We will need to change this due to our navigation changing. Also, this is an opportunity to make our 'search help' more professional and less jargony (remove 'auto-complete')

We will need to get buy-in for whatever (less) text we show on the mobile

If you select a specific variant on mobile, you'll notice there's a visible 15px padding on the left side of the div containing the variant detail table. If you swipe all the way to the right side of the table, there's no padding visible between the right side of the table and the right side of the page. In this way, it's not obvious that you're seeing the entire table (the rightmost border is not visible).

The steering committee has decided that All Public Data would be a fine and suitable name for the portal that shows all the public data. This will involve many small labeling changes.

ClinVar is ready to go
Molly will take on 1000 Genomes next, and Melissa will take on ESP next.

Show scrollbar on variant table to signal to user that there is more information available (maybe a default of the browser to not show, nbd).

• Make Name and Role required
• Make email and password optional for patients

From @melissacline on February 18, 2016 21:2

At https://github.com/BD2KGenomics/brca, update the section pertaining to restarting the GA4GH reference server as needed.

Copied from original issue: BD2KGenomics/brca-pipeline#139

From Mary:

Looks like there's quite a few options. Unsure which would be the best one. This is something that typically Brian C would look into as far as ease of implementation, features, etc.

Django email programs and templates (there are a ton): https://djangopackages.org/grids/g/email/. Maybe we can use one of these without mailchimp since several of them offer unsubscribe, etc. However, could not find email templates that were anything but text (ie. not professional looking). I searched for about 30 sec and then stopped so there could be things out there.

"Mandrill is a transactional email service offered by Mailchimp. There is an API client library for that too at https://pypi.python.org/pypi/mandrill/, "

Mandrill API: https://mandrillapp.com/api/docs/

Someone integrating django and mailchimp: http://qasimalbaqali.com/django-newsletter-app-with-mailchimp/

Note the djrill (django-mandrill interface) is no longer being maintained: https://djrill.readthedocs.io/en/v2.1/ and Mandrill is a paid service.

API for google contacts: https://developers.google.com/google-apps/contacts/v3/
You can add custom fields to google contacts: https://productforums.google.com/forum/?hl=en#!category-topic/gmail/contacts-and-sync/NaDweDetNGA

Use only full width of screen, prevent scrolling left and right (currently it’s too wide on mobile and allows some scrolling, also the sandwich icon in the navbar is initially off screen to the right which makes page navigation awkward).
Seeing funkiness in this respect -- sometimes it starts ok, then gets messed up after submitting a query on the homepage. Will need further review to understand what the problem is.

If this is still a problem on the beta system, just add a More to the right side to stretch the navbar vertically. We've talked about putting certain menu items under More, particularly the ones that we think would get less traffic.

Mary Goldman
5:38 PM Yesterday
I've wireframed the 'More' here: https://docs.google.com/presentation/d/1rJ0_1Cpl9ePovhFm7ZsAjxQLsqI9AH8RqH-VksW3sVY Still may be too long with 'Community' ...

Zack Fischmann
8:53 AM Today
The problem I'm referring to here is that the "Research" text under the BRCA Exchange logo forces the sandwich menu icon down. Here's an image to demonstrate https://drive.google.com/file/d/0B4x14fnKjtITamFqZkR2V0F0amc/view?usp=sharing

Zack Fischmann
8:55 AM Today
I've noticed that on Safari mobile, the menu icon is initially off screen, which we could also fix.

Joe, would you add a photo to your github profile? It can be of yourself, or of whatever you like, just something more distinctive than the default random bit pattern. Thanks!

Even though we call it logging in, really it is just adjusting your profile. There are no additional benefits to logging in as far as the main community page is concerned.

After someone logs in, they can change their information and then when they click 'submit', they are automatically logged out. If they have further changes, then they log in again.

Does this make any sense?

Remove:
Comment
Include me in the community page
Include me in the mailing list