alexeyg / grass Goto Github PK

hi Alexey,
I've tried compiling GRASS using the latest g++ and it seems that it doesn't like the static const double construction in some of scaffoldOptimizer's classes. It seems like, instead, they are to be declared static constexpr. I don't understand the difference between them in detail but at least it seems to compile with this change.

Running make will result in an error. Apparently external includes and libs are needed, but there is no list of which ones.

Docs are currently only available as a manual/*.tex file.

Could you provide a PDF or convert to Markdown using pandoc?

Hi,
I am trying to prepare a package for Gentoo Linux. The following error seems that you maybe use some IBM development CPLEX library? Any details whether it is required or not?

g++ -c -O2 -m64 -std=gnu++0x -Wall -fPIC -fexceptions -fopenmp -DNDEBUG -DIL_STD -I../Common/ -I/usr/include/bamtools -I/data/bio/alexeygritsenk/apps/ILOG/cplex/include -I/data/bio/alexeygritsenk/apps/ILOG/concert/include -I/usr/include/ncbi-tools++ -o obj/DPSolver.o DPSolver.cpp
In file included from IterativeSolver.h:33:0,
                 from EMSolver.h:34,
                 from DPSolver.cpp:30:
FixedMIQPSolver.h:35:30: fatal error: ilcplex/ilocplex.h: No such file or directory
 #include <ilcplex/ilocplex.h>
                              ^
compilation terminated.
Makefile:30: recipe for target 'obj/DPSolver.o' failed
make[1]: *** [obj/DPSolver.o] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-biology/grass-20130628/work/GRASS-master/scaffoldOptimizer'
Makefile:24: recipe for target 'scaffoldOptimizer' failed

This is needed for downstream packaging.

GRASS is quite challenging to build due to some unusual dependencies.

Any chance of (static) binaries being made available?