eernst Goto Github PK
Name: Evan Ernst
Type: User
Company: CSHL/HHMI
Twitter: antnerves
Name: Evan Ernst
Type: User
Company: CSHL/HHMI
Twitter: antnerves
de novo sequence assembler
Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes
A single molecule sequence assembler for genomes large and small.
Extensive de-novo TE Annotator
Manipulate FASTA files
Simple and quick FastQ and FastA tool for file reading and conversion
A fully automated gene annotator from RNA-Seq expression data
finshingTool
De novo assembler for single molecule sequencing reads using repeat graphs
:microscope: Scientific formulae for the Homebrew package manager
Iterative error correction of long reads
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Near optimal RNA-Seq quantification
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
MITObim - mitochondrial baiting and iterative mapping
Data and analysis for NA12878 genome on nanopore
First generation RNN basecaller
Signal-level algorithms for MinION data
Genome guided re-segmention and visualization for raw nanopore sequencing data.
Ngmlr is a long-read mapper designed to align PacBilo or Oxford Nanopore to a reference genome with a focus on reads that span structural variations
Phylogenetic orthology inference for comparative genomics
PASA software
A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.
Support for large memory allocations for the genomic repeat analysis tool from Robert Edgar and Eugene Myers.
Hybrid error correction of long reads using colored de Bruijn graphs
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.