akhileshkaushal Goto Github PK

oktoberfest

Rescoring and spectral library generation pipeline for proteomics.

ols-demo-app

OLS-demo-App

oneliners

Useful bash one-liners for bioinformatics.

open-data-registry

A registry of publicly available datasets on AWS

pancancer

Building classifiers using cancer transcriptomes across 33 different cancer-types

pancancer-1

Pancancer related code and aux. data.

pdx_exomeseq

Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models

percy

Scripts for starting permanent, lightweight EC2 instances

pipeline_accessioning

Accessioning of pipeline data to ENCODE Portal

plos_biology_2018_ignored_genes

Software to study why most genes are ignored

population_genetics_in_r

A primer for computational tools to analyze genetics of populations in R

pori_python

prad-compartments

Analysis scripts to accompany Simmons et al 2016 manuscript 'Integrating chromatin compartment maps with genome-wide transcription factor binding profiles and gene expression data identifies transcriptional drivers of prostate carcinogenesis'

prosit

Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019" DOI 10.1038/s41592-019-0426-7

pwiz

The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.

python

All Algorithms implemented in Python

python-docs-samples

Code samples used on cloud.google.com

python-machine-learning-book-2nd-edition

The "Python Machine Learning (2nd edition)" book code repository and info resource

quip

Compressing next-generation sequencing data with extreme prejudice.

r-shiny-mysql-template

This example shows how to use Anychart library with the R programming language, Shiny web framework and MySQL database.

repo-2017

Python codes in Machine Learning, NLP, Deep Learning and Reinforcement Learning with Keras and Theano

rna-bloom

:hibiscus: reference-free transcriptome assembly for short and long reads

rna-scoop

:shipit: interactive visualization of single-cell transcriptomes

rna-seq-pipeline

rnaseq-survival-analysis-tcga-kirc

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

romim

sarek

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

sas

scipy-lecture-notes

Tutorial material on the scientific Python ecosystem