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keras_autoencoder_impute

lem

A pipeline to extract leading edge metagene from GSEA results

liger

R package for integrating and analyzing multiple single-cell datasets

long-read-rna-pipeline

ENCODE long read RNA-seq pipeline

long-rna-seq-pipeline

STAR based ENCODE Long RNA-Seq processing pipeline

longstitch

Correct and scaffold assemblies using long reads

machine_learning_edu

Machine learning education

mammary_snatac-seq

Single cell ATAC-seq of mouse mammary cells

metabolomics-i

Untargeted LC/MS-based metabolomics data analysis.

metagwastoolkit

A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies

mint

A pipeline for the integration of DNA methylation and hydroxymethylation data

mirna

microRNA profiling pipeline

mirna-seq-pipeline

mlml2r

Consistent simultaneous estimates of DNA methylation and hydroxymethylation using R

model-free-data

Case-control genetics datasets evolved to be epistatic

modular-programming-with-python

Modular-Programming-with-Python Code

mofa2

Multi-Omics Factor Analysis V2 (MOFA+)

msdialworkbench

Universal workbench incorporating msdial, msfinder, and mrmprobs

msproteomicstools

Some hopefully useful tools for mass spectrometry applied to proteomics

multimodalprognosis

Deep Learning with Multimodal Representation for Pancancer Prognosis Prediction

multiple-myeloma-classifier

Multi-class KRAS/NRAS Classifier for Multiple Myeloma

myhybrid

Demo of a Reticulated Shiny App, using NREL's FASTSim model to compare vehicle MPGs for a user defined trip.

myrna

Cloud-scale differential expression for RNA-seq

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

nextflow

A DSL for data-driven computational pipelines

nf1_inactivation

Using Machine Learning to Identify Glioblastoma patients with NF1 inactivation

ngseasy

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

ngsplot

Quick mining and visualization of NGS data by integrating genomic databases

normpy

Normalization methods for RNA-Seq expression data in Python.

ntedit

✏️ Genome assembly polishing & SNV detection