akhileshkaushal Goto Github PK

aeqtl

airflow

Apache Airflow

amazon-ec2-user-guide-windows

The open source version of the Amazon EC2 User Guide for Windows. To submit feedback or requests for changes, submit an issue or make changes and submit a pull request.

ampl

The ATOM Modeling PipeLine (AMPL) is an open-source, modular, extensible software pipeline for building and sharing models to advance in silico drug discovery.

annotation-refinery

argon

Fast, whole-genome simulation of the discrete time Wright-Fisher process

artificial-intelligence-deep-learning-machine-learning-tutorials

A comprehensive list of Deep Learning / Artificial Intelligence and Machine Learning tutorials - rapidly expanding into areas of AI/Deep Learning / Machine Vision / NLP and industry specific areas such as Automotives, Retail, Pharma, Medicine, Healthcare by Tarry Singh until at-least 2020 until he finishes his Ph.D. (which might end up being inter-stellar cosmic networks! Who knows! 😀)

atac-seq-pipeline

ENCODE ATAC-seq pipeline

awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

aws-batch-genomics

Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.

aws-batch-user-guide

The open source version of the AWS Batch user guide. You can submit feedback & requests for changes by submitting issues in this repo or by making proposed changes & submitting a pull request.

aws-cli

Universal Command Line Interface for Amazon Web Services

batch-ge

bayesian-basics

:no_entry_sign: :leftwards_arrow_with_hook: A document that introduces Bayesian data analysis.

bayesianprobabilitiesworkshop

A collection of questions and solutions to problems presented at Rasmus Bååth's Bayesian probabilities workshop.

bgwas

R package for Bayesian Genome-Wide Association Study

bio-playground

miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.

bioconductor-scraper

A scraper which tries to generate conda recipes for bioconductor and other needed R packages.

bioinfotools

Documenting usage and experience with bioinformatic tools

book

Book resources for Beyond Spreadsheets with R

bowtie-majref

Scripts related to building major-allele references for Bowtie and Bowtie 2

bowtie2

A fast and sensitive gapped read aligner

btllib

Bioinformatics Technology Lab common code library

callings-nf

GATK RNA-Seq Variant Calling in Nextflow

cell-proportions

cellphonedb

cellranger

10x Genomics Single Cell 3' Gene Expression and VDJ Assembly

chip-seq-analysis

ChIP-seq analysis notes from Tommy Tang

chip-seq-pipeline2

ENCODE ChIP-seq pipeline

chirpseq-analysis

converts chirpseq fastq files into bedgraphs suitable for downstream processing