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sharkviewer

web-based 3D swc neuron viewer

simulationtutorials

Public tutorials around electrophysiological simulations

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

sinto

Tools for single-cell data processing

sleuth

Differential analysis of RNA-Seq

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

sphinx-gallery

Sphinx extension for automatic generation of an example gallery

starfish

starfish: unified pipelines for image-based transcriptomics

statsmodels

Statsmodels: statistical modeling and econometrics in Python

style_transfer

The neural network to transfer the style from one image to another.

svae

torchdiffeq

Differentiable ODE solvers with full GPU support and O(1)-memory backpropagation.

trigger_words

Reccurent neural network trained to catch trigger words in audio

tutorial

uncertainpy

Uncertainpy: a Python toolbox for uncertainty quantification and sensitivity analysis.

vaa3d_wiki

www.vaa3d.org

variancepartition

Quantify and interpret divers of variation in multilevel gene expression experiments

vgaba-hco3

Simplified model

wishbone

Wishbone is an algorithm to align cells along developmental trajectories with branches