abuchin Goto Github PK

models

Models built with TensorFlow

monet

Monet: An open-source Python package for analyzing and integrating scRNA-Seq data using PCA-based latent spaces

morphnet_webtool

multicpa

mygene.py

mygene is an easy-to-use Python wrapper to access MyGene.Info services.

nbdime

Tools for diffing and merging of Jupyter notebooks.

net-control

netcontrol-master

Net-contrlol-Realistic connectivity

neuromac

Neuronal Morphologies & Circuits

neuromorphovis

A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.

neuron-ui

NEURON User Interface

neurosummerschools

List of summer schools in neuroscience and related fields

noise2noise

Noise2Noise: Learning Image Restoration without Clean Data - Official TensorFlow implementation of the ICML 2018 paper

notebook

Jupyter Interactive Notebook

nwb-api

openai_tools

Growing set of scripts to explore pdf publication using ChatGPT API

paga

Mapping out the coarse-grained connectivity structures of complex manifolds.

paper-qa

LLM Chain for answering questions from documents with citations

patchseq_human_l23

Code for reproducing the analyses presented in "Human cortical expansion involves diversification and specialization of supragranular intratelencephalic-projecting neurons".

pydeseq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

pyensembl

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

pyenv

Simple Python version management

pynwb

pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

pyscenic

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

python-neo

Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats

pythondatasciencehandbook

Jupyter Notebooks for the Python Data Science Handbook

pywgcna

PyWGCNA is a Python package designed to do Weighted correlation network analysis (WGCNA)

resnet_sign

The network to recognize digits shown by one hand.

rtneuron

Interactive visualization framework for geometrically detailed neuron simulations