zuoxinian / ccs Goto Github PK

Hi, I try to run the DREAM on my PC. I use the MATLAB R2016a and also set the path. However, when I enter the DREAM in the command line, the error occurred as following.

error using DREAM
error: file:DREAM.mlapp Row: 111 column: 40
The input character is not valid in MATLAB statements or expressions.

Anyone know how to fix it ?

Dear authors:
Recently I have a looking at your this project and feel interested in it ! I am interested in this project, but I also face some challenges. and I wish I could receive your suggestion from your guide..
The question 1 is that, could this software be installed on the Windows system?
The question 2 is that, the Data Organizing part, I has accessed to the https://bids.neuroimaging.io/, and the introduction of dcm2bids, and I also feel confused. Could have a simple usage of this software？ Where could I find?
The question 3 is that, "4.4 Resting-state functional image pre-processing"Part, and I want to know the understanding of these parameters, such as: the rest_dir_name, the rest_name, TR, numDropping and the sliceOrder.

Any suggestion or recommendation is appreciated.
Thank you. I am looking forward to your reply Sincerely!

Best regards.

Hi, I tried to run DREAM with BIDS format but failed. Here's my setting:

But there came error as following,

错误使用 save
由于 'D:\Tools\Testdata\DREAM_BIDS\DP\sub-M57900WDANYULIANG\func' 不存在，无法创建 'DREAM.mat'。

出错 DREAM_FreqCalc_IMG (line 10)
save(savep);

出错 DREAM/RunButtonPushed (line 131)
DREAM_FreqCalc_IMG(app.tr,app.workdir,app.sub_list,app.data,app.files);

Sometimes I got this error with the same settings:

错误使用 importdata (line 139)
无法打开文件。

出错 DREAM/RunButtonPushed (line 142)
csv = importdata('freqbands.csv');

错误使用 matlab.ui.control.internal.controller.ComponentController/executeUserCallback (line 382)
计算 Button PrivateButtonPushedFcn 时出错。
错误使用 matlab.ui.control.internal.controller.ComponentController/executeUserCallback (line 382)
计算 Button PrivateButtonPushedFcn 时出错。

Lines 108 and 119 of script H1/ccs_01_anatpreproc.sh need the file ${CCSDIR}/templates/MNI152_T1_1mm_first_brain_mask.nii.gz which is not in the repository.

Is it ok to use the template with the same name in the folder ${FSLDIR}/data/standard/MNI152_T1_1mm_first_brain_mask.nii.gz?