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33primates

Code and data for the article “Evolution of neocortical folding: A phylogenetic comparative analysis of MRI from 33 primate species”

alignment_macaque-human

cross-species alignment (joint-embedding between human and macaque)

alluvial

Alluvial diagrams

ants

Advanced Normalization Tools (ANTs)

antsr

Advanced Normalization Tools in R

applesiliconforneuroimaging

Review the challenges and potential of ARM-based Apple Silicon macOS for brain imaging research

areal

Areal interpolation scripts, for analysis of brain cortical surface area.

brainbrowser

Web-based visualization tools for neurological data.

braindr

Its like Tinder, for Brains!

brainhacknyc2021

BrainhackNYC2021

cbig

ccs

Connectome Computation System

ccs-archived

ccs-pipeline

Connectome Computation System - processing pipeline

cifti

Creation of new CIFTI files and the reading and manipulating of existing ones

cifti-matlab

MATLAB code for reading and writing CIFTI connectivity files

cifti_greyordinates

cifti Greyordinates in different resolutions

combatharmonization

Harmonization with ComBat

dcan-macaque-pipeline

The actual pipeline code, based on hcp, for non-human-primates - sp macaques.

deepmreye

Main model and preprocessing code

discriminability

a repository for computing and analyzing datasets with discmriniability.

dropbox-uploader

Dropbox Uploader is a BASH script which can be used to upload, download, list or delete files from Dropbox, an online file sharing, synchronization and backup service.

edge-centric_demo

demo code edge-centric functional connectivity (eFC); Faskowitz et al. (2020)

evolutionofcorticalshape

Data and tools from the publication "Evolution of Cortical Geometry and its Link to Function, Behaviour and Ecology" by Schwartz et al. for mapping values defined on cortical surfaces between species based on their phylogenetic relationship

floweaver

View flow data as Sankey diagrams

ggseg3d

ggseg3d R package for cisualising brain atlases through plotly

gitmarklet

gitmarklet: Brief summaries of scientific papers I've read indexed via Github Issues

hcp-tractography

Dipy pipeline for reconstruction and tracking of tractography from Human Connectome Project dataset

hcppipelines

Processing pipelines for the HCP

hnp-preprocessing