zorrodong Goto Github PK

scifate

scifate processing script

scimet

sciphi

scira

scmerge

Statistical technique for removing unwanted variation from multiple scRNA-seq datasets

scnmt-seq

single-cell Nucleosome Methylation Transcription

scode

SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation

scphere

scpopcorn

A python tool to do comparative analysis of mulitple single cell datasets.

scrna-seq-pipelines

Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"

scrna.seq.course

Analysis of single cell RNA-seq data course

scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

scrnaseq_pipelines

scrnaseq_workflow_benchmark

Workflow for the analysis fo single-cell RNASeq data using R/bioconductor

scscope

scsva

Single-cell Scalable Visualization and Analytics

sct-moa

Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"

scvelo

Stochastic Single Cell RNA Velocity

scvi

A deep generative model for gene expression profiles from single-cell RNA sequencing

seacr

SEACR: Sparse Enrichment Analysis for CUT&RUN

sepath_tool_uea

SEPATH template pipelines optimised for UEA high performance computing cluster

seqclone

seqprocess

SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package

seurat

R toolkit for single cell genomics

signac

R toolkit for the analysis of single-cell chromatin data

simlr

Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/nmeth.4207

simspec

Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)

single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineage

Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversification during foregut organogenesis

single_cell_intestine

R code for single-cell analysis of intestinal epithelial cells

singlecellnet

SingleCellNet: classify single cells across species and platforms