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Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).
The pipeline for NORM-Seq in tangfuchou lab for Epigenetic analysis.
Cell type annotation guided by cell atlases, with freedom to be queer
Prize-Collecting Steiner Forests for Interactomes
Mapping topologies of complex manifolds.
An R package for studying mutational and structural variant signatures along clonal evolution in cancer.
An algorithm for mapping cell state transitions.
Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models
Predict cell cycle phase in a continuum in single-cell RNA-seq data analysis
Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
Package for comparing single-cell samples
Subpopulation detection in high-dimensional single-cell data
A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRNAseq data. However, existing techniques are based on Euclidean geometry which is not an optimal choice for modeling complex cell trajectories with multiple branches. To overcome this fundamental representation issue we propose Poincaré maps, a method harnessing the power of hyperbolic geometry into the realm of single-cell data analysis.
Scripts and functions achieve for the paper "Single-cell genomic atlas of great ape cerebral organoids uncovers human-specific features of brain development" (https://www.biorxiv.org/content/10.1101/685057v1)
:exclamation: This is a read-only mirror of the CRAN R package repository. propagate — Propagation of Uncertainty
An R package to calculate proportionality between vectors of compositional data
PRObabilistic Simulations of ScRNA-seq Tree-like Topologies
Dynamic models for single-cell RNA-seq time series.
Simulate next-generation sequencing reads for tumor samples
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
Best practices for readable, sharable, and verifiable R code
Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and StemID2 method including novel functionalities and performance improvements compared to the previous RaceID3/StemID2 version in the RaceID3_StemID2 repository. The RaceID3_StemID2 repository will not be updated anymore in the future.
Fast Reference-Guided Scaffolding of Genome Assembly Contigs
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.