Introduction

Computational Genomics research at the University of Pittsburgh with Dr. Miler Lee and students to understand Maternal-to-Zygotic transition in Xenopus laevis. The project involved Differential Gene Expression Analysis in R and prior file manipulation in Linux.

Files

📂 Paper/Maternal to Zygotic Transition in Xenopus Laevis.pdf

Final research paper which includes background, methods, figures and explanation.

📂 Paper/Supplementary Documentation.pdf

File containing all the Bash and R commands used to pull meaningful insight from the NGS data.

📂 Presentation/Research Presentation.pptx

PowerPoint presentation given which goes through results and significance of work. The presentation is filled with few words since most of the information was given orally.

📂 Presentation/Research Presentation.pdf

PDF file of presentation given to those who wanted to take notes.

📂 Laevis Files/

Contains placeholders of all files used during analysis. This is provided to show files and file types created in the Supplementary Documentation.pdf. This may also give a novice some understanding of what files they would need to deal with in case they replicated this analysis.

Contact Information

Yogindra Raghav (YogiOnBioinformatics)

[email protected]