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Name: Yogindra Raghav
Type: User
Company: University of Virginia (UVA) Medicine
Bio: Aspiring Scientist, Author, Philosopher. Computational Biology PhD Student @ UVA Medicine
Location: Charlottesville, VA
Yogindra Raghav's Projects
aals-epigenomics-signal-reproducibility
Determining reproducibility of Epigenomic signal for Answer ALS
algorithm-implementation
Projects and Essays from Algorithm Implementation (CS 1501) at University of Pittsburgh
applied-linear-algebra-math-3350
Handwritten work & R code related to University of Virginia's MATH 3350 ( Applied Linear Algebra)
assorted-computational-genomics-data-visualizations
Biplots, Volcano plots, PCA plots, Heatmaps and more Computational Genomics data created and visualized during University of Pittsburgh course, Computational Biology (BIOSC1540), with Dr. Miler Lee
b-cells-in-atherosclerosis
Work done during rotation with Coleen McNamara & Stefan Bekiranov in UVA BIMS PhD program
bioimaging-informatics-machine-learning-for-cancerous-breast-cell-detection
Worked with Dr. Shandong Wu at University of Pittsburgh to use software to improve outcomes for breast cancer risk detection.
bioinformatics-for-protein-ligand-interactions
Published work of mine in Pitt Biological Sciences Advising Blog about using Bioinformatics to predict Ligand-Protein interactions.
blast-biopython-challenge
Challenge to efficiently BLAST files (FASTA file & quality scores) and report key metrics about FASTA back to user.
cheminformatics-machine-learning-with-nnscore-2.0
Project in the Durrant Lab at UPitt that wanted to re-use code from a previous neural network ligand-protein interaction software to extract features for ML
chip-seq-analysis-nanog-and-h3k27ac
Independent project I undertook to perform a full ChIP-Seq analysis of the transcription factor Nanog in Zebrafish embryos.
comp-bio-images
Containers that I use in my work.
computational-biology-research-assistant
Links to other repositories containing all the work I did as a Computational Biology Research Assistant in the Dr. Jacob D. Durrant Lab of Computational Drug Discovery, University of Pittsburgh.
computational-drug-discovery-internship-at-merck
Description of work done at Merck pharmaceutical company in the summer of 2018 as a Computational Drug Discovery Intern at West Point, PA. Information excludes all proprietary information belonging to Merck & Co.
copd-clinical-metric-prediction-from-rna-seq
Work done during rotation with Ani Manichaikul during UVA PhD program
dame-destruction-of-aqueous-microfibers-enzymatically
Destruction of Aqueous Microfibers Enzymatically (DAME): A novel Synthetic Biology systems approach to destroying Polyester-based Microplastic fibers
data-structure-implementations
A repository containing examples of Data Structure Implementations that I did during my University of Pittsburgh course CS445: Data Structures-Abstractions and Implementations
differential-gene-expression-analysis-with-machine-learning-using-dexamethasone-treatment-data
Worked with fellow peers at University of Pittsburgh under supervision of Dr. Junshu Bao, Department of Statistics, University of Pittsburgh, to do a Differential Gene Expression Analysis on a Dexamethasone treatment data set and incorporated Machine Learning into project.
dotfiles
Dotfiles + config files that I use in my personal and professional work.
drug-usage-with-baby-boomers
Independent Data Science project undertaken to investigate drug usage among the Baby Boomer generation in the recent past.
epigenomics-of-novel-ipsc-derived-als-cortical-neurons
Validating the first human iPSC-derived Cortical Neuron ALS model via systematic Epigenomic analysis.
hidden-markov-model-based-integration-of-multi-assay-epigenomics-samples
Integration of ATAC-Seq and multi-assay ChIP-Seq data using IDEAS (Hidden Markov Model) approach.Multi-Epigenomic state annotation with CHDI NeuroLINCS Epigenomics data using the tool "IDEAS"
joint-genotyping-2021-2022
Joint Genotyping in MIT Fraenkel Lab with ALS Genomics + 1000 Genomes Data
maternal-to-zygotic-transition-in-xenopus-laevis
Research project undertaken in Computational Genomics at the University of Pittsburgh. with Dr. Miler Lee and students to understand Maternal-to-Zygotic transition in Xenopus laevis
molecular-phylogenomics-using-mega-x
Examples of Molecular Phylogenomics figures created from self-taught usage of MEGA-X software.
multi-epigenomics-elasticnet-ordinal-regression
Ordinal Logistic Regression with ElasticNet Regularization using Multi-Assay Epigenomics Data from CHDI NeuroLINCS Consortium.
non-scientific-writing
This repository contains examples of non-scientific writing that I have done. This may be useful for those wanting to know about my writing style and ability since it is useful in the scientific world.
principles-of-data-science
Work done for University of Pittsburgh course "Principles of Data Science" (STAT 1261) with Dr. Junshu Bao in Fall semester of 2018.
proteinvr
Protein Virtual Reality is a University of Pittsburgh project with Dr. Jacob D. Durrant that is the world's first anatomical and protein visualization VR program tailored for collegiate-biology courses.
resource-files
Common resource files necessary for Computational Biology research.
senior-computational-biology-correspondent-pittpulse
Contains publications that I wrote for the PittPulse during my time as a Senior Computational Biology Correspondent.
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