Comments (2)
xunchen85
commented on June 25, 2024
Hi,
Thanks for your question. So far it does not work with bwa-mem2 because of the different command lines used in our scripts.
Since bwa-mem2 will produce the same output as bwa-mem, it should not be too difficult to update ERVcaller to support the latest bwa-mem2. I will update it soon...
Thanks,
Xun
from ervcaller.
lalvarez011
commented on June 25, 2024
Thank you very much Dr. Xun!
I'll keep an eye out for the updates
from ervcaller.
Related Issues (20)
- 关于SE_MEI的问题 HOT 2
- Argument "-" isn't numeric in subtraction (-) at ERVcaller_v.1.3.pl line 1305, <OUT3> line 2. HOT 1
- failed at step 3 HOT 3
- Problem in Step 2 HOT 5
- Error unexpected end of file HOT 1
- RNAseq data HOT 3
- I also had a problem with the second step HOT 10
- [E::bwa_idx_load_from_disk] fail to locate the index files HOT 10
- Cannot remove "sort.bam.tmp.0000.bam" files HOT 2
- Lack of "GQ" value in output.vcf and some question about "Merging" step HOT 10
- Some chromosomes don't harbour any variation HOT 5
- A question about the "INFOR" field HOT 4
- About using TGS data HOT 2
- Some chromosomes don't harbour any variation HOT 2
- Length of TSD HOT 2
- Assembly of the target ERV HOT 1
- Question of setting the -H parameter HOT 1
- A question of filter criteria in guide paper HOT 1
- Error in finding the input data under the provided sampleID HOT 1
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