Comments (3)
xunchen85
commented on June 26, 2024
Hi, it should be because no TEs were detected in the earlier step. We currently make the tools to run with human genome. Maybe you could check the reference coordinates, is it named "chr1-24,X,Y"?
Xun
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e-lerat
commented on June 26, 2024
Actually, it is not a human organism. I thought that using my own genome reference (-H) it would work.
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xunchen85
commented on June 26, 2024
I see, it could also be used for other genomes with a bit changes to the code. Let me know if I could further help.
Xun
from ervcaller.
Related Issues (20)
- 关于SE_MEI的问题 HOT 2
- Argument "-" isn't numeric in subtraction (-) at ERVcaller_v.1.3.pl line 1305, <OUT3> line 2. HOT 1
- Problem in Step 2 HOT 5
- Error unexpected end of file HOT 1
- RNAseq data HOT 3
- I also had a problem with the second step HOT 10
- [E::bwa_idx_load_from_disk] fail to locate the index files HOT 10
- Cannot remove "sort.bam.tmp.0000.bam" files HOT 2
- bwa-mem2 HOT 2
- Lack of "GQ" value in output.vcf and some question about "Merging" step HOT 10
- Some chromosomes don't harbour any variation HOT 5
- A question about the "INFOR" field HOT 4
- About using TGS data HOT 2
- Some chromosomes don't harbour any variation HOT 2
- Length of TSD HOT 2
- Assembly of the target ERV HOT 1
- Question of setting the -H parameter HOT 1
- A question of filter criteria in guide paper HOT 1
- Error in finding the input data under the provided sampleID HOT 1
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