Comments (2)
ok, thank you for your answer! I will continue to adjust my parameters.~
from ervcaller.
Hi,
this error was induced by the samtools sort step which may be because of "out of memory" or "running time". it usually indicates the job was not finished yet. you will see an empty vcf file unless you already re-run it with the same sample names.
thanks,
xun
from ervcaller.
Related Issues (20)
- failed at step 3 HOT 3
- Problem in Step 2 HOT 5
- Error unexpected end of file HOT 1
- RNAseq data HOT 3
- I also had a problem with the second step HOT 10
- [E::bwa_idx_load_from_disk] fail to locate the index files HOT 10
- bwa-mem2 HOT 2
- Lack of "GQ" value in output.vcf and some question about "Merging" step HOT 10
- Some chromosomes don't harbour any variation HOT 5
- A question about the "INFOR" field HOT 4
- About using TGS data HOT 2
- Some chromosomes don't harbour any variation HOT 2
- Length of TSD HOT 2
- Assembly of the target ERV HOT 1
- Question of setting the -H parameter HOT 1
- A question of filter criteria in guide paper HOT 1
- Error in finding the input data under the provided sampleID HOT 2
- Cannot progress beyond step 2 HOT 5
- Assemble inserted virus sequence through intermediate output files HOT 8
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from ervcaller.