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netmf's Introduction

NetMF

This is a Python implementation of NetMF for the task of network embedding learning, as described in our paper:

Network Embedding as Matrix Factorization: Unifying DeepWalk, LINE, PTE, and node2vec

Data Sets

BlogCatalog Source Preprocessed

Protein-Protein Interaction Source Preprocessed

Wikipedia Source Preprocessed

Flickr

Cite

Please cite our paper if you use this code in your own work:

@inproceedings{qiu2018network,
  title={Network Embedding as Matrix Factorization: Unifying DeepWalk, LINE, PTE, and node2vec},
  author={Qiu, Jiezhong and Dong, Yuxiao and Ma, Hao and Li, Jian and Wang, Kuansan and Tang, Jie},
  booktitle={Proceedings of the Eleventh ACM International Conference on Web Search and Data Mining},
  pages={459--467},
  year={2018},
  organization={ACM}
}

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netmf's Issues

reason for returning S_d \sqrt(\Sigma_d) as the network embedding

Thanks for sharing the code. I'm curious about why after obtaining the approximated deepwalk matrix (after max(x, 1) and taking log), in the last step of NetMF, it is $$U_d \sqrt(\Sigma_d)$$ from SVD that is returned as the final embedding? The paper doesn't seem to justify the benefit of this instead of some other embedding.

How to scale up to big data?

Thanks for the great paper. I would like to use it on a specific application with big data, yet it fails in the middle of the computations due to memory issues. Do you have any suggestions on how to improve the code to be applicable to adjacency matrices of million nodes?

Clarify license?

What license is this code released under? If you haven't decided yet might I suggest Apache 2 or MIT?
thanks

Exact validation setting

Dear authors, I am wondering, whether you discarded the part of the dataset used for hyperparameter training during test phase? If not, how were the hyperparameters determined?

Thank you very much.

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