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data_science_h1

datasciencecoursera

datasharing

The Leek group guide to data sharing

dessertisland

An iOS app for viewing dessert recipes

dnaworks

Automatic oligonucleotide design for PCR-based gene synthesis

dodesign

Quick script for running fixed backbone design using PyRosetta

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

geofold

getdist

Simple Python script using BioPython to extract the distances between scissile phosphates in PX DNA and in a Holliday junction from PDB 2PFJ

hw2_alignment

HW 2 for Bioinformatics I, performs an alignment of two sequences given a scoring matrix

job_distributor

A generic job distributor class for farming out and managing MPI jobs using mpi4py, scipy, and numpy

loophash

Builds and hashes a database of protein loops. Includes lookup functionality.

maptool

Virtual Tabletop for playing roleplaying games with remote players or face to face.

nvda

NVDA, the free and open source Screen Reader for Microsoft Windows

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

patternfind

These programs are intended to search a FASTA sequence of a protein or dna for a specific pattern specified in either prosite or IUPAC format respectively. They take in a few command

pictocross

A web app to generate a puzzle from an image and to play such puzzles

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

px

Code written for the PX project

px-indel

r_hw4

Homework 4 for R Programming course on Coursera

seamly2d

Open source patternmaking software to democratize fashion.

seamtest

Code and database for testing new seam implementation in GeoFold

superp

A short Python script that generates a csv of superposition matrices and vectors of all phosphates in a DNA molecule

testextension

My first Chrome extension. Made by following the tutorial here: https://developer.chrome.com/extensions/getstarted. Allows the user to change the background color of a webpage.

thesis-1

RPI PhD thesis

walcob.github.io