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Isobaric Tag Processign Pipeline

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pnnl-comp-mass-spec jmoon1 jfontestad

plexedpiper's Issues

Docker line typo

there is an extra quote " in the README line:

RUN R -e 'remotes::install_github("vladpetyuk/PlexedPiper", build_vignettes = TRUE")'

it should be...

RUN R -e 'remotes::install_github("vladpetyuk/PlexedPiper", build_vignettes = TRUE)'

reference file needed?

When checking this step:

references <- read_tsv(system.file("extdata/study_design/references.txt", package = "PlexedPiperTestData"))

is that "reference.txt" file truly needed? It looks like the information could be extracted from "samples" like this:

reference <- filter(samples, ReporterAlias == "ref")
reference <- rename(reference, Reference = ReporterAlias)
reference <- reference[c('PlexID', 'QuantBlock', 'Reference')]

In this way, we would avoid generating too many files

Vignette building failed

Building the docker command throws this error:

   SUMMARY: processing the following file failed:
     ‘tmt_pipeline_v1_PNNL_DMS.Rmd’

   Error: Vignette re-building failed.
   Execution halted
Error: Failed to install 'PlexedPiper' from GitHub:
  System command error, exit status: 1, stdout + stderr (last 10 lines):
E>   QuantBlock = col_double(),
E>   Reference = col_character()
E> )
E> --- finished re-building ‘tmt_pipeline_v1.Rmd’
E>
E> SUMMARY: processing the following file failed:
E>   ‘tmt_pipeline_v1_PNNL_DMS.Rmd’
E>
E> Error: Vignette re-building failed.
E> Execution halted
Execution halted
The command '/bin/sh -c R -e 'remotes::install_github("vladpetyuk/PlexedPiper", build_vignettes = TRUE)'' returned a non-zero code: 1

Warnings when installing PlexedPiper

Hi there,

I am getting all these warnings when installing PlexedPiper on a docker container:

─  building ‘PlexedPiperTestData_0.1.0.tar.gz’

  
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_01_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_01_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_02_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_02_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_03_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_03_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_04_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_04_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_05_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_05_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_06_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_06_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_07_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_07_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_08_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_08_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_09_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_09_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_10_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_10_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_11_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_11_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_12_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_12_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_13_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_13_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_14_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_14_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_15_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_15_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_16_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_16_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_17_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_17_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_18_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_18_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_19_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_19_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_20_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_20_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_21_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_21_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_22_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_22_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_23_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_23_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_24_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S1_24_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_01_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_01_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_02_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_02_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_03_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_03_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_04_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_04_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_05_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_05_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_06_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_06_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_07_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_07_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_08_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_08_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_09_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_09_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_10_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_10_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_11_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_11_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_12_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_12_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_13_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_13_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_14_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_14_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_15_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_15_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_16_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_16_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_17_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_17_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_18_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_18_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_19_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_19_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_20_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_20_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_21_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_21_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_22_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_22_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_23_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_23_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_24_12Oct17_Elm_AQ-17-09-02_ReporterIons.txt.xz’

  
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/masic_output/MoTrPAC_Pilot_TMT_W_S2_24_12Oct17_Elm_AQ-17-09-02_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_01_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_02_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_03_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_04_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_05_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_06_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_07_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_08_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_09_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_10_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_11_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_12_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_13_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_14_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_15_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_16_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_17_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_18_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_19_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_20_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_21_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_22_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_23_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S1_24_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_01_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_02_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_03_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_04_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_05_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_06_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_07_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_08_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_09_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_10_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_11_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_12_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_13_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_14_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_15_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_16_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_17_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_18_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_19_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_20_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_21_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_22_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_23_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/global/msgf_output/MoTrPAC_Pilot_TMT_W_S2_24_12Oct17_Elm_AQ-17-09-02_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_01_DIL_28Oct17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_01_DIL_28Oct17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_02_DIL_28Oct17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_02_DIL_28Oct17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_03_DIL_28Oct17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_03_DIL_28Oct17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_04_DIL_28Oct17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_04_DIL_28Oct17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_05_DIL_28Oct17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_05_DIL_28Oct17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_06_DIL_28Oct17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_06_DIL_28Oct17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_07_DIL_28Oct17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_07_DIL_28Oct17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_08_DIL_28Oct17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_08_DIL_28Oct17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_09_DIL_28Oct17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_09_DIL_28Oct17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_10_DIL_28Oct17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_10_DIL_28Oct17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_11_DIL_28Oct17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S1_11_DIL_28Oct17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_01_3Nov17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_01_3Nov17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_02_3Nov17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_02_3Nov17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_03_3Nov17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_03_3Nov17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_04_3Nov17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_04_3Nov17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_05_3Nov17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_05_3Nov17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_06_3Nov17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_06_3Nov17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_07_3Nov17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_07_3Nov17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_08_3Nov17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_08_3Nov17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_09_3Nov17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_09_3Nov17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_10_3Nov17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_10_3Nov17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_11_3Nov17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_11_3Nov17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_12_3Nov17_Elm_AQ-17-10-03_ReporterIons.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/masic_output/MoTrPAC_Pilot_TMT_P_S2_12_3Nov17_Elm_AQ-17-10-03_SICstats.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S1_01_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S1_02_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S1_03_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S1_04_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S1_05_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S1_06_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S1_07_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S1_08_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S1_09_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S1_10_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S1_11_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S2_01_3Nov17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S2_02_3Nov17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S2_03_3Nov17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S2_04_3Nov17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S2_05_3Nov17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S2_06_3Nov17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S2_07_3Nov17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S2_08_3Nov17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S2_09_3Nov17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S2_10_3Nov17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S2_11_3Nov17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/msgf_output/MoTrPAC_Pilot_TMT_P_S2_12_3Nov17_Elm_AQ-17-10-03_msgfplus_syn.txt.xz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S1_01_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S1_02_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S1_03_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S1_04_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S1_05_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S1_06_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S1_07_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S1_08_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S1_09_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S1_10_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S1_11_DIL_28Oct17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S2_01_3Nov17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S2_02_3Nov17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S2_03_3Nov17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S2_04_3Nov17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S2_05_3Nov17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S2_06_3Nov17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S2_07_3Nov17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S2_08_3Nov17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S2_09_3Nov17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S2_10_3Nov17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S2_11_3Nov17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

  
   Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
     storing paths of more than 100 bytes is not portable:
     ‘PlexedPiperTestData/inst/extdata/phospho/mzids/MoTrPAC_Pilot_TMT_P_S2_12_3Nov17_Elm_AQ-17-10-03_msgfplus.mzid.gz’

add version dependency on MSnID

infer_parsimonious_accessions uses unique_only argument, that was introduced in later MSnID versions. The mismatch in versions causes failure of vignette compilation.

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