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autort

AutoRT: Peptide retention time prediction using deep learning

bcm

bcm-gsea

bcm-spectra

bcmproteomics

A python package that allows easy access to data from the BCM Proteomics database.

bcmrmd

biolccc-cli

CLI wrapper around pyteomics.biolccc

click

Python composable command line utility

complexheatmap

Make Complex Heatmaps

cosmo

COSMO: COrrection of Sample Mislabeling by Omics

dotfiles

My dotfiles/configs

filegrouper

Group files with similar names at the command line, implemented with Click!

flowcytometrytools

A python package for visualization and analysis of high-throughput flow cytometry data

geneviz

Library for visualising genomic features in Python.

goatools

Python scripts to find enrichment of GO terms

gpgrouper

in house grouping program for proteomics

grouper

Rewrite of the filemaker script for grouper in python

hello-world

Test

ispec

R Shiny interface to proteomics data in iSPEC

just-proteomics

just various routines for managing and processing proteomics data

kojakspectrumviewer

MS/MS spectral search results viewer. Applicable for any search results in pepXML. Specializes in cross-linked search results.

latex-moderncv

My latex resume using the moderncv template

mcdowell-cv

A Nice-looking CV template made into LaTeX

mokapot-analyses

The code for reproducing the results from "mokapot: Fast and flexible semi-supervised learning for peptide detection"

mspcmonitor

mspcrunner

mspcrunnerdag

DAGster pipeline for proteomics

pmid_utils

ppinet

A Python package for biological network generation and analysis

py-upset

A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.