Hello, I put here the information gather during the build process.

running clean
removing '/<>/.pybuild/pythonX.Y-dbg_3.5/build' (and everything under it)
setup.py:90: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<>/src/fisx_version.h' mode='r' encoding='ANSI_X3.4-1968'>
content = open(os.path.join(cppDir, "fisx_version.h"), "r").readlines()
setup.py:237: ResourceWarning: unclosed file <_io.TextIOWrapper name='README.rst' mode='r' encoding='ANSI_X3.4-1968'>
long_description = open("README.rst").read()

/<>/src/fisx_math.cpp: In static member function 'static double fisx::Math::hypermet(const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&, const double&)':
/<>/src/fisx_math.cpp:607:18: warning: unused variable 'MY_PI' [-Wunused-variable]
const double MY_PI = 3.141592653589793;
^
/<>/src/fisx_math.cpp:609:18: warning: unused variable 'log2' [-Wunused-variable]
const double log2 = 0.69314718055994529;
^
/<>/src/fisx_math.cpp:611:18: warning: unused variable 'sigmaToFWHM' [-Wunused-variable]
const double sigmaToFWHM = 2.3548200450309493;
^

/<>/src/fisx_xrf.cpp: In member function 'std::mapstd::__cxx11::basic_string<char, std::mapstd::cxx11::basic_string<char, double> > fisx::XRF::getFluorescence(const string&, const fisx::Elements&, const int&, const string&, const int&, const int&)':
/<>/src/fisx_xrf.cpp:227:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (iLayer = 0; iLayer < sampleLayerIndex; iLayer++)
^
/<>/src/fisx_xrf.cpp: In member function 'double fisx::XRF::getGeometricEfficiency(const int&) const':
/<>/src/fisx_xrf.cpp:471:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (iLayer = referenceLayerIndex; iLayer < sampleLayerIndex; iLayer++)
^
/<>/src/fisx_xrf.cpp:479:52: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (iLayer = sampleLayerIndex; iLayer < referenceLayerIndex; iLayer++)
^
/<>/src/fisx_xrf.cpp: In member function 'void fisx::XRF::getSpectrum(double, double, double*, int, const std::mapstd::__cxx11::basic_string<char, double>&, const std::mapstd::__cxx11::basic_string<char, double>&, const std::mapstd::__cxx11::basic_string<char, double>&, const expectedLayerEmissionType&) const':
/<>/src/fisx_xrf.cpp:594:12: warning: unused variable 'eta' [-Wunused-variable]
double eta = 0.0;
^
/<>/src/fisx_xrf.cpp:630:33: warning: 'gain' may be used uninitialized in this function [-Wmaybe-uninitialized]
energy[i] = zero + gain * channel[i];
^
/<>/src/fisx_xrf.cpp:630:26: warning: 'zero' may be used uninitialized in this function [-Wmaybe-uninitialized]
energy[i] = zero + gain * channel[i];
^

/<>/src/fisx_elements.cpp:1856:16: warning: variable 'factor' set but not used [-Wunused-but-set-variable]
double factor;
^
/<>/src/fisx_elements.cpp:1831:12: warning: variable 'intrinsicEfficiency' set but not used [-Wunused-but-set-variable]
double intrinsicEfficiency;
^
/<>/src/fisx_elements.cpp: In member function 'std::mapstd::__cxx11::basic_string<char, double> fisx::Elements::parseFormula(const string&) const':
/<>/src/fisx_elements.cpp:1635:13: warning: 'parsingKey' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (parsingKey)
^

/<>/src/fisx_simpleini.cpp:94:17: warning: 'p0' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (p0 != 0)
^
/<>/src/fisx_xrfconfig.cpp:68:10: warning: variable 'fisxFile' set but not used [-Wunused-but-set-variable]
bool fisxFile;
^

/<>/src/fisx_epdl97.cpp:617:31: warning: unused variable 'j' [-Wunused-variable]
int i, idx, iMu, nValues, j;
^

As it is written, the XRF class does not have its own Elements library and requires an existing instance for calculations.

This has the advantage of being able to compare the same configuration with multiple libraries and also to make sure the library is not modified (const instruction)

This has the problem that all the materials need to have been previously defined in the elements library.

A proper parser is needed somewhere (in Elements class or in XRF class) when using C++ and PyMca generated cfg files. This is particularly true when providing materials that depend on other materials and not pure elements. Even things like Ag1 are currently not considered as a pure element.

Hello, could you add the licenses of all the fisx_data files.
In order to upload fisx into Debian, I need to check the licenses of these files.
Depending on these licnese, I will target the main, non-free or no upload into Debian.

I need the full licenses text of the original databases used to generate these files.
without these informations, I could not upload fisx into Debian :((

Cheers

The partial photoelectric cross sections respect the supplied binding energies, but the total mass attenuation coefficients have the last word.

In the figure below, the data correspond to lead with a) the total mass attenuation coefficient using EADL binding energies, b) corresponds to the total photoelectric cross section using the PyMca binding energies and c) the K-shell partial photoelectric cross section using the same binding energies as in b).

The original intention is that provided total photoelectric cross sections, one could calculate the probability to excite a particular shell using the partial cross-sections.

One should provide a method to adjust a set of total photoelectric cross sections to a different set of binding energies than the ones implicitly used by it.

Now I get this error.

estSimpleSpecfileReadingWithCRLF (fisx.tests.testSimpleSpecfile.testSimpleSpecfile) ... ok

ERROR: testXRFResults (fisx.tests.testXRF.testXRF)

Traceback (most recent call last):
File "fisx/tests/testXRF.py", line 90, in testXRFResults
elementsInstance.initializeAsPyMca()
File "python/cython/_fisx.pyx", line 289, in fisx._fisx.PyElements.initializeAsPyMca (/<>/python/cython/_fisx.cpp:5358)

AttributeError: 'fisx._fisx.PyElements' object has no attribute '__initializeAsPyMcaOld'

when I am looking at the code it seems now that fisx depends on pymca ????
pyma -> fisx -> pymca

all reference to Pymca should be removed from fisx and it should work without pymca

cheers

Frederic

Hello armando

here the result of the unit tests

testXRFImport (fisx.tests.testXRF.testXRF) ... ok
testXRFInstantiation (fisx.tests.testXRF.testXRF) ... ok
testXRFResults (fisx.tests.testXRF.testXRF) ... ERROR
testEPDL97Import (fisx.tests.testEPDL97.testEPDL97) ... ok
testElementsImport (fisx.tests.testElements.testElements) ... ok
testElementsInstantiation (fisx.tests.testElements.testElements) ... FAIL
testSimpleSpecfileImport (fisx.tests.testSimpleSpecfile.testSimpleSpecfile) ... ok
testSimpleSpecfileReading (fisx.tests.testSimpleSpecfile.testSimpleSpecfile) ... ok
testSimpleSpecfileReadingCompatibleWithUserLocale (fisx.tests.testSimpleSpecfile.testSimpleSpecfile) ... ok
testSimpleSpecfileReadingWithCRLF (fisx.tests.testSimpleSpecfile.testSimpleSpecfile) ... ok
testDataDirectoryPresence (fisx.tests.testDataDir.testDataDir) ... FAIL
testDataFilePresence (fisx.tests.testDataDir.testDataDir) ... FAIL
testDocDirectoryPresence (fisx.tests.testDataDir.testDataDir) ... FAIL

ERROR: testXRFResults (fisx.tests.testXRF.testXRF)

Traceback (most recent call last):
File "fisx/tests/testXRF.py", line 89, in testXRFResults
elementsInstance = Elements()
File "python/cython/_fisx.pyx", line 276, in fisx._fisx.PyElements.cinit (/<>/python/cython/_fisx.cpp:4950)
File "fisx/DataDir.py", line 60, in
raise IOError('%s directory not found' % basename)
IOError: directory not found

FAIL: testElementsInstantiation (fisx.tests.testElements.testElements)

Traceback (most recent call last):
File "fisx/tests/testElements.py", line 81, in testElementsInstantiation
'Unsuccesful Elements() instantiation')
AssertionError: Unsuccesful Elements() instantiation

FAIL: testDataDirectoryPresence (fisx.tests.testDataDir.testDataDir)

Traceback (most recent call last):
File "fisx/tests/testDataDir.py", line 69, in testDataDirectoryPresence
'Unsuccessful fisx.DataDir import')
AssertionError: Unsuccessful fisx.DataDir import

FAIL: testDataFilePresence (fisx.tests.testDataDir.testDataDir)

Traceback (most recent call last):
File "fisx/tests/testDataDir.py", line 79, in testDataFilePresence
self.testDataDirectoryPresence()
File "fisx/tests/testDataDir.py", line 69, in testDataDirectoryPresence
'Unsuccessful fisx.DataDir import')
AssertionError: Unsuccessful fisx.DataDir import

FAIL: testDocDirectoryPresence (fisx.tests.testDataDir.testDataDir)

Traceback (most recent call last):
File "fisx/tests/testDataDir.py", line 104, in testDocDirectoryPresence
'Unsuccessful fisx.DataDir import')
AssertionError: Unsuccessful fisx.DataDir import

Ran 13 tests in 0.070s

FAILED (failures=4, errors=1)
('Instantiation error: ', <type 'exceptions.IOError'>, IOError(' directory not found',), <traceback object at 0xb6b7357c>)
E: pybuild pybuild:274: test: plugin distutils failed with: exit code=1: cd /<>/.pybuild/pythonX.Y_2.7/build; python2.7 -m unittest discover -v
dh_auto_test: pybuild --test -i python{version} -p 2.7 returned exit code 13
debian/rules:11: recipe for target 'build' failed
make: *** [build] Error 25
dpkg-buildpackage: error: debian/rules build gave error exit status 2

It seems that fisx does not find the DATADIR. Indeed I fixed it for the package once installed.
export FISX_DATA_DIR=/usr/share/fisx/
This way I can share the data (18 Mo) between the python2 and python3.

I do not have yet a great conviction how to deal with this issue...
I can use your tests in the ci.Debian.net (test pacakges once they are installed), but not during the build process.

Currently the C++ library is able to read a configuration from an ini file written by PyMca.

It is desirable that the C++ library could write a file with the configuration.

I try to install fisx on Windows 10 with pip, well actually I try to install PyMca, but fisx is one of its dependencies. Both installations fails with:

    running install_lib
    copying build\lib.win32-2.7\fisx\DataDir.py -> C:\Python27\Lib\site-packages\fisx
    copying build\lib.win32-2.7\fisx\_fisx.pyd -> C:\Python27\Lib\site-packages\fisx
    byte-compiling C:\Python27\Lib\site-packages\fisx\DataDir.py to DataDir.pyc
    running install_data
    fisx to be installed in C:\Python27\Lib\site-packages\
    running install_egg_info
    running egg_info
    writing requirements to python\fisx.egg-info\requires.txt
    writing python\fisx.egg-info\PKG-INFO
    writing top-level names to python\fisx.egg-info\top_level.txt
    writing dependency_links to python\fisx.egg-info\dependency_links.txt
    reading manifest file 'python\fisx.egg-info\SOURCES.txt'
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "c:\users\ieuser\appdata\local\temp\pip-install-nenff2\fisx\setup.py", line 339, in <module>
        setup_requires=setup_requires,
      File "C:\Python27\lib\site-packages\setuptools\__init__.py", line 131, in setup
        return distutils.core.setup(**attrs)
      File "C:\Python27\lib\distutils\core.py", line 151, in setup
        dist.run_commands()
      File "C:\Python27\lib\distutils\dist.py", line 953, in run_commands
        self.run_command(cmd)
      File "C:\Python27\lib\distutils\dist.py", line 972, in run_command
        cmd_obj.run()
      File "C:\Python27\lib\site-packages\setuptools\command\install.py", line 61, in run
        return orig.install.run(self)
      File "C:\Python27\lib\distutils\command\install.py", line 575, in run
        self.run_command(cmd_name)
      File "C:\Python27\lib\distutils\cmd.py", line 326, in run_command
        self.distribution.run_command(command)
      File "C:\Python27\lib\distutils\dist.py", line 972, in run_command
        cmd_obj.run()
      File "C:\Python27\lib\site-packages\setuptools\command\install_egg_info.py", line 34, in run
        self.run_command('egg_info')
      File "C:\Python27\lib\distutils\cmd.py", line 326, in run_command
        self.distribution.run_command(command)
      File "C:\Python27\lib\distutils\dist.py", line 972, in run_command
        cmd_obj.run()
      File "C:\Python27\lib\site-packages\setuptools\command\egg_info.py", line 278, in run
        self.find_sources()
      File "C:\Python27\lib\site-packages\setuptools\command\egg_info.py", line 293, in find_sources
        mm.run()
      File "C:\Python27\lib\site-packages\setuptools\command\egg_info.py", line 524, in run
        self.add_defaults()
      File "C:\Python27\lib\site-packages\setuptools\command\egg_info.py", line 567, in add_defaults
        self.read_manifest()
      File "C:\Python27\lib\site-packages\setuptools\command\sdist.py", line 199, in read_manifest
        self.filelist.append(line)
      File "C:\Python27\lib\site-packages\setuptools\command\egg_info.py", line 466, in append
        path = convert_path(item)
      File "C:\Python27\lib\distutils\util.py", line 124, in convert_path
        raise ValueError, "path '%s' cannot be absolute" % pathname
    ValueError: path '/users/sole/GIT/fisx/LICENSE' cannot be absolute

Thanks in advance for any kind of help!

on a clean install of the master branch of fisx with Anaconda Python 2.7.11 on Mac OSX (10.11):

Python 2.7.11 |Anaconda 2.4.1 (x86_64)| (default, Dec  6 2015, 18:57:58) 
[GCC 4.2.1 (Apple Inc. build 5577)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
Anaconda is brought to you by Continuum Analytics.
Please check out: http://continuum.io/thanks and https://anaconda.org
>>> from fisx import Elements, version 
>>> version()
'1.0.6'
>>> elems  = Elements()
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "python/cython/_fisx.pyx", line 288, in fisx._fisx.PyElements.__cinit__ (/Users/Newville/Codes/fisx_sole/python/cython/_fisx.cpp:5189)
    self.thisptr = new Elements(directoryName)
 is not a valid transition

Hi Armando,

I am seeing a compilation warning for the following two lines:

/tmp/pip-req-build-8m4M4E/src/fisx_math.cpp: In static member function ‘static double fisx::Math::AS_5_1_56(const double&)’:
/tmp/pip-req-build-8m4M4E/src/fisx_math.cpp:152:25: warning: array subscript is above array bounds [-Warray-bounds]
             num = (num + a[i]) * x;
                             ^
/tmp/pip-req-build-8m4M4E/src/fisx_math.cpp:153:25: warning: array subscript is above array bounds [-Warray-bounds]
             den = (den + b[i]) * x;

This looks like a bug to me as the first iteration will start at 4 causing therefore the out of bounds array access.

If you agree, I will gladly submit a PR with a fix.

Best,

Tom

There appears to be a syntax error near https://github.com/vasole/fisx/blob/master/python/cython/_fisx.pyx#L733 :

def fisxVersion():
    return _fisxVersion()#import numpy as np
#cimport numpy as np
cimport cython

When I try to run setup.py on a unix system, I get:

cythoning /home/darren/conda-bld/work/python/cython/_fisx.pyx to /home/darren/conda-bld/work/python/cython/_fisx.cpp

Error compiling Cython file:
------------------------------------------------------------
...
#from libcpp.string cimport string as std_string

from Version cimport fisxVersion as _fisxVersion

def fisxVersion():
    return _fisxVersion()import numpy
                        ^
------------------------------------------------------------

python/cython/_fisx.pyx:93:25: Syntax error in simple statement list

I think the pyx file just needs to be changed to read:

def fisxVersion():
    return _fisxVersion()
#import numpy as np
#cimport numpy as np
cimport cython

however, making that change appears to have no effect on the build. Furthermore, running setup.py appears to rewrite _fisx.pyx in place, but I can't figure out why, or what source it is using to rewrite the contents of that file.

Python 3.9 is out. Waiting for the availability of numpy wheels.

Hello armando, here a bunch of warning observed during the build

kages/numpy/core/include -I/<<PKGBUILDDIR>>/src -I/usr/include/python3.6dm -c /<<PKGBUILDDIR>>/src/fisx_simpleini.cpp -o build/temp.linux-amd64-3.6-pydebug/<<PKGBUILDDIR>>/src/fisx_simpleini.o
/<<PKGBUILDDIR>>/src/fisx_simpleini.cpp: In member function 'void fisx::SimpleIni::readFileName(std::__cxx11::string)':
/<<PKGBUILDDIR>>/src/fisx_simpleini.cpp:94:17: warning: 'p0' may be used uninitialized in this function [-Wmaybe-uninitialized]
                 if (p0 != 0)
                 ^~
x86_64-linux-gnu-gcc -pthread -g -Og -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/<<PKGBUILDDIR>>/src -I/usr/include/python3.6dm -c /<<PKGBUILDDIR>>/src/fisx_xrfconfig.cpp -o build/temp.linux-amd64-3.6-pydebug/<<PKGBUILDDIR>>/src/fisx_xrfconfig.o
/<<PKGBUILDDIR>>/src/fisx_xrfconfig.cpp: In member function 'void fisx::XRFConfig::readConfigurationFromFile(const string&)':
/<<PKGBUILDDIR>>/src/fisx_xrfconfig.cpp:68:10: warning: variable 'fisxFile' set but not used [-Wunused-but-set-variable]
     bool fisxFile;
          ^~~~~~~~
x86_64-linux-gnu-gcc -pthread -g -Og -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/<<PKGBUILDDIR>>/src -I/usr/include/python3.6dm -c /<<PKGBUILDDIR>>/src/fisx_version.cpp -o build/temp.linux-amd64-3.6-pydebug/<<PKGBUILDDIR>>/src/fisx_version.o
x86_64-linux-gnu-gcc -pthread -g -Og -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/<<PKGBUILDDIR>>/src -I/usr/include/python3.6dm -c /<<PKGBUILDDIR>>/src/fisx_elements.cpp -o build/temp.linux-amd64-3.6-pydebug/<<PKGBUILDDIR>>/src/fisx_elements.o
/<<PKGBUILDDIR>>/src/fisx_elements.cpp: In member function 'void fisx::Elements::setMassAttenuationCoefficients(const string&, const std::vector<double>&, const std::vector<double>&, const std::vector<double>&, const std::vector<double>&, const std::vector<double>&)':
/<<PKGBUILDDIR>>/src/fisx_elements.cpp:813:33: warning: comparison of integer expressions of different signedness: 'std::vector<double>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
                 if ((i - j - 1) == extractedEdgeEnergies[shell].second)
                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/fisx_elements.cpp: In member function 'std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> > fisx::Elements::getEscape(const std::map<std::__cxx11::basic_string<char>, double>&, const double&, const double&, const double&, const int&, const double&, const double&) const':
/<<PKGBUILDDIR>>/src/fisx_elements.cpp:1954:16: warning: variable 'factor' set but not used [-Wunused-but-set-variable]
         double factor;
                ^~~~~~
/<<PKGBUILDDIR>>/src/fisx_elements.cpp: In member function 'std::map<std::__cxx11::basic_string<char>, double> fisx::Elements::parseFormula(const string&) const':
/<<PKGBUILDDIR>>/src/fisx_elements.cpp:1708:13: warning: 'parsingKey' may be used uninitialized in this function [-Wmaybe-uninitialized]
             if (parsingKey)
             ^~
/<<PKGBUILDDIR>>/src/fisx_elements.cpp: In member function 'std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> > fisx::Elements::getEscape(const std::map<std::__cxx11::basic_string<char>, double>&, const double&, const double&, const double&, const int&, const double&, const double&) const':
/<<PKGBUILDDIR>>/src/fisx_elements.cpp:1979:26: warning: 'intrinsicEfficiency' may be used uninitialized in this function [-Wmaybe-uninitialized]
                     rate /= intrinsicEfficiency;
                     ~~~~~^~~~~~~~~~~~~~~~~~~~~~

python/cython/_fisx.cpp is included in the git tree but appears to be over-written each time python setup.py build is run. If it is always built (should it be, or only when needed?), it should not be part of the source control system.

It makes the project look like an HTML project!

In addition, it is difficult to update because doxygen changes the date inside all the generated files.

The documentation should be generated and made available, but not under version control.

TABLE I of page 2990 of Chen et al. Phys Rev. A 27 (1983) contains inconsistent data for the first two rows.

Hello armando, it works great with the python2 versions but with python3 I get this

Cheers

Fred

I: pybuild base:184: cd /<>/.pybuild/pythonX.Y_3.5/build; python3.5 -m unittest discover -v
testDataDirectoryPresence (fisx.tests.testDataDir.testDataDir) ... ok
testDataFilePresence (fisx.tests.testDataDir.testDataDir) ... FAIL
testDocDirectoryPresence (fisx.tests.testDataDir.testDataDir) ... ok
testEPDL97Import (fisx.tests.testEPDL97.testEPDL97) ... ok
testElementsImport (fisx.tests.testElements.testElements) ... ok
testElementsInstantiation (fisx.tests.testElements.testElements) ... FAIL
testSimpleSpecfileImport (fisx.tests.testSimpleSpecfile.testSimpleSpecfile) ... ok
testSimpleSpecfileReading (fisx.tests.testSimpleSpecfile.testSimpleSpecfile) ... ok
testSimpleSpecfileReadingCompatibleWithUserLocale (fisx.tests.testSimpleSpecfile.testSimpleSpecfile) ... ok
testSimpleSpecfileReadingWithCRLF (fisx.tests.testSimpleSpecfile.testSimpleSpecfile) ... ok
testXRFImport (fisx.tests.testXRF.testXRF) ... ok
testXRFInstantiation (fisx.tests.testXRF.testXRF) ... ok
testXRFResults (fisx.tests.testXRF.testXRF) ... ERROR

ERROR: testXRFResults (fisx.tests.testXRF.testXRF)

Traceback (most recent call last):
File "/<>/.pybuild/pythonX.Y_3.5/build/fisx/tests/testXRF.py", line 89, in testXRFResults
elementsInstance = Elements()
File "python/cython/_fisx.pyx", line 288, in fisx._fisx.PyElements.cinit (/<>/python/cython/_fisx.cpp:5192)
OSError: EPDL97: Number of scans not equal one in binding energies file /<>/.pybuild/pythonX.Y_3.5/build///EADL97_BindingEnergies.dat: iostream error

FAIL: testDataFilePresence (fisx.tests.testDataDir.testDataDir)

Traceback (most recent call last):
File "/<>/.pybuild/pythonX.Y_3.5/build/fisx/tests/testDataDir.py", line 98, in testDataFilePresence
'File "%s" does not exist.' % actualName)
AssertionError: False is not true : File "/<>/.pybuild/pythonX.Y_3.5/build/BindingEnergies.dat" does not exist.

FAIL: testElementsInstantiation (fisx.tests.testElements.testElements)

Traceback (most recent call last):
File "/<>/.pybuild/pythonX.Y_3.5/build/fisx/tests/testElements.py", line 81, in testElementsInstantiation
'Unsuccesful Elements() instantiation')
AssertionError: False is not true : Unsuccesful Elements() instantiation

Ran 13 tests in 0.095s

FAILED (failures=2, errors=1)
Instantiation error: <class 'OSError'> EPDL97: Number of scans not equal one in binding energies file /<>/.pybuild/pythonX.Y_3.5/build///EADL97_BindingEnergies.dat: iostream error <traceback object at 0xb5f99fcc>
E: pybuild pybuild:274: test: plugin distutils failed with: exit code=1: cd /<>/.pybuild/pythonX.Y_3.5/build; python3.5 -m unittest discover -v
dh_auto_test: pybuild --test -i python{version} -p 3.5 returned exit code 13
debian/rules:26: recipe for target 'override_dh_auto_test' failed
make[1]: *** [override_dh_auto_test] Error 25
make[1]: Leaving directory '/<>'
debian/rules:14: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2