uio-bmi Goto Github PK

refactorr

refactoring r code

roman

rough_graph_mapper

Simple proof-of-concept graphmapping with Python

s3mq

LocalEGA S3 AMQP proxy

sequence_retriever_refactoring

Refactoring excercise (sequence retriever)

serverless-demo

Demo project of AWS serverless application

sfb_knowledgebase

Knowledge base with links to relevant resources by the Centre for Bioinformatics, UiO.

simcal

Simulation Calibration codebase for evaluating ML pipelines between real and learned worlds

similarity-measures

Code for the similarity measures article

statistical_genomics_exercises

stats_for_cs

Accompanying notebooks for the new stats course for computer scientists with simulations

submission-portal

EGA Submission Portal stub

synthpwr

Synthetic framework for stress testing the parameters and statistical power of epigenetic power calculators

taxclassusingml

Master thesis: Comparing Artificial Neural Networks and Microbial Genome Representation Methods for Taxonomic Classification

track_rand

Track randomization code

tsd-file-api-client

TSD File API Client

tsd-file-api-stub

two_step_graph_mapper

variant_calling_benchmarks_two_step_mapper

Scripts for reproducing the variant calling benchmarks presented in the two step mapper paper.

virmake

VirMake is a Snakemake based pipeline that offers viral metagenic data analysis on paired-end data. It offers taxonomic and functional annotation, supports offline running and support for HPC cluster execution. It is made for Linux based systems and has been tested on SLURM cluster execution.