Topic: stringtie Goto Github
Some thing interesting about stringtie
Some thing interesting about stringtie
stringtie,
User: animesh911
stringtie,A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
User: cfarkas
stringtie,This repository houses the pipeline I coded to perform differential analysis of transcriptomes from two oyster species, C. gigas and C. virginica and isolate genes in the apoptosis pathway.
User: erinwitkop
stringtie,This project uses an workflow pipeline to generate map and assemble RNAseq reads to a reference genome. Furthermore, we generate counts data and identify differentially expressed genes from 2 conditions.
User: groverkaushal
stringtie,snakemake files of the tuxedo v2 pipeline from Pertea et al 2016
User: jlanga
Home Page: https://github.com/jlanga/smsk_tuxedo2
stringtie,Attempt at snakemake pipeline. Pyflow was forked from https://github.com/crazyhottom but the Snakefile infrastructure and rule calling was inspired by https://github.com/snakemake-workflows
User: manninm
stringtie,These are tutorials on a subset of tools available for processing raw RNAseq data. This if for HISAT2_SAMtools_Stringtie_gffcompare_ballgown pipeline or HISAT2_SAMtools_Stringtie_PrepDEanalysis.py_DESeq2 pipeline
User: mppl1
stringtie,RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Organization: pavlidislab
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