Topic: napari Goto Github
Some thing interesting about napari
Some thing interesting about napari
napari,Tool for segmentation in bioimaging
Organization: 4dnucleome
Home Page: https://partseg.github.io/
napari,napari plugin for blob detection in images
User: adrtsc
Home Page: https://adrtsc.github.io/napari-blob-detection/
napari,A simple plugin to detect vesicles in cells images.
User: alexisjapas
napari,A plugin that enables image segmentation provided by Allen Institute for Cell Science
Organization: allencell
napari,Multiple file format reading directly into napari using pure Python
Organization: allencellmodeling
napari,MONAI Label client plugin for napari
User: bhoeckendorf
napari,This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.
Organization: biapol
Home Page: https://BiAPoL.github.io/Quantitative_Bio_Image_Analysis_with_Python_2022
napari,Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.
Organization: bioimageanalysiscorewehi
Home Page: https://github.com/BioimageAnalysisCoreWEHI/napari_lattice/wiki
napari,Segmentation of anatomical structures in a common coordinate space
Organization: brainglobe
Home Page: https://brainglobe.info/documentation/brainglobe-segmentation/index.html
napari,Automated 3D brain registration in napari with support for multiple species and atlases.
Organization: brainglobe
Home Page: https://brainglobe.info/documentation/brainreg/index.html
napari,Efficient cell detection in large images using cellfinder in napari
Organization: brainglobe
Home Page: https://brainglobe.info/documentation/cellfinder/index.html
napari,2D image registration in python, using napari.
Organization: brancolab
napari,Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
User: brisvag
Home Page: https://brisvag.github.io/blik/
napari,Discover, install, and share napari plugins
Organization: chanzuckerberg
napari,A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.
User: chris-n-k
napari,GPU-accelerated general purpose image processing and image analysis in napari
Organization: clesperanto
Home Page: http://clesperanto.net
napari,Segment Anything for Microscopy
Organization: computational-cell-analytics
Home Page: https://computational-cell-analytics.github.io/micro-sam/
napari,A napari plugin for the DeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.
Organization: deep-finder
Home Page: https://deep-finder.github.io/napari-deepfinder/
napari,Segment mouse lungs and metastasis on MRI images.
User: edgarlefevre
napari,Image analysis with Python and Napari.
Organization: epfl-center-for-imaging
Home Page: https://epfl-center-for-imaging.github.io/napari-imaging-epfl-2023/
napari,Image data and Python scripts for the course on Bioimage analysis with Napari
User: fabriziomusacchio
Home Page: https://www.fabriziomusacchio.com/teaching/teaching_bioimage_analysis/
napari,A plugin to visualise 3D spatial single cell omics
Organization: guignardlab
napari,Feature extraction for labeled objects in images using regionprops from scikit-image
User: haesleinhuepf
napari,Speed up coding/extending image analysis in Python.
User: hanjinliu
napari,Executable script generation for napari plugins
User: hanjinliu
napari,Text layer for bio-image annotation.
User: hanjinliu
napari,A GUI based on napari for counting cells automatically in cell migration experiments
Organization: helmholtzai-consultants-munich
napari,Use ImageJ functionality from napari
Organization: imagej
Home Page: https://napari-imagej.readthedocs.io
napari,Convert between itk and napari data structures.
Organization: insightsoftwareconsortium
napari,File IO with itk for napari.
Organization: insightsoftwareconsortium
napari,Mother machine image analysis through napari
Organization: junlabucsd
napari,Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.
Organization: kapoorlabs-caped
Home Page: https://pypi.org/project/napatrackmater/
napari,Track and lineage visualization with btrack and Napari :evergreen_tree:
Organization: lowe-lab-ucl
napari,Napari Photobleach Correction
User: marx-alex
napari,Linking napari layers with Matplotlib plots
Organization: matplotlib
Home Page: https://napari-matplotlib.github.io/
napari,napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
Organization: mouseland
Home Page: https://cellpose-napari.readthedocs.org
napari,napari: a fast, interactive, multi-dimensional image viewer for python
Organization: napari
Home Page: https://napari.org
napari,A napari plugin for making animations
Organization: napari
Home Page: https://napari.github.io/napari-animation/
napari,napari plugin manager to provide a graphical user interface for installing napari plugins.
Organization: napari
Home Page: https://napari.org/napari-plugin-manager
napari,website for the napari image viewer
Organization: napari
Home Page: https://napari.org/
napari,Collection of useful (to me) python scripts for interacting with napari
User: psobolewskiphd
napari,GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets
Organization: pymmcore-plus
Home Page: https://pymmcore-plus.github.io/napari-micromanager/
napari,A large and somewhat ugly plugin for viewing and analysing hyperspectral data in Napari
User: samthiele
napari,Interactive visualization of spatial omics data
Organization: scverse
Home Page: https://spatialdata.scverse.org/projects/napari/en/latest/
napari,StarDist plugin for napari
Organization: stardist
napari,A napari plugin for itk-elastix
Organization: superelastix
napari,TileDB BioImaging plugin for Napari
Organization: tiledb-inc
napari,Browse your OMERO database from within napari.
User: tlambert03
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