Topic: cryo-et Goto Github
Some thing interesting about cryo-et
Some thing interesting about cryo-et
cryo-et,structural heterogeneity analysis for cryo-ET subtomogram
User: alncat
cryo-et,Python scripts to quantiatively describe Arp2/3 complex organization on travelling Actin Waves
User: anmartinezs
cryo-et,Python scritps for rendering and distance analysis of proteins (proteasome) and segmentations (poly-GA aggregates) in Cryo-ET
User: anmartinezs
cryo-et,Python package for segmentation and analysis of Cryo-ET
User: anmartinezs
cryo-et,Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
User: brisvag
Home Page: https://brisvag.github.io/blik/
cryo-et,A pipeline to detect domains in cryo-EM density map by parsing domains from AlphaFold databases and fitting into the map for the best hits.
User: builab
cryo-et,Code and Data related to Wimmer and Morais et al (2023)
User: bwmr
cryo-et,Toolbox for post-correlation cryo-CLEM workflow developed at Chlanda Lab, Heidelberg University.
Organization: chlanda-lab
cryo-et,A napari plugin for the DeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.
Organization: deep-finder
Home Page: https://deep-finder.github.io/napari-deepfinder/
cryo-et,Denoising and segmentation networks for cryoET based on U-net architecture implemented in Pytorch
User: fickincool
cryo-et,ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.
User: frangakislab
Home Page: https://frangakis.biophysik.org/
cryo-et,PyTorch implementation of "Open-set Recognition of Unseen Macromolecules in Cellular Electron Cryo-Tomograms by Soft Large Margin Centralized Cosine Loss"
User: hmrishavbandy
cryo-et,Self-supervised learning for isotropic cryoET reconstruction
Organization: isonet-cryoet
Home Page: https://www.nature.com/articles/s41467-022-33957-8
cryo-et,TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.
Organization: kudryashevlab
Home Page: https://github.com/KudryashevLab/TomoBEAR/wiki
cryo-et,TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing
User: logicvay2010
Home Page: http://dx.doi.org/10.1017/S2633903X24000060
cryo-et,Self-supervised deep learning for denoising and missing wedge reconstruction of cryo-ET tomograms
Organization: mli-lab
cryo-et,cryo-ET particle picking by representation and metric learning
Organization: mpi-dortmund
cryo-et,A tool to normalize CryoET data by matching amplitude spectrums.
User: mrmattuschka
cryo-et,Cellular content mining and particle localization
Organization: nextpyp
Home Page: https://nextpyp.app/milopyp/
cryo-et,Constrained single particle tomography
Organization: nextpyp
Home Page: https://nextpyp.app/
cryo-et,Electron tomography toolkit: geometric picking and sub-volume averaging
Organization: nextpyp
Home Page: https://nextpyp.app/
cryo-et,Web-interface for nextPYP
Organization: nextpyp
Home Page: https://nextpyp.app/
cryo-et,Cryo-EM/ET image analysis
Organization: nextpyp
Home Page: https://nextpyp.app/
cryo-et,2D NN-based particle picking from sparse labels
Organization: nextpyp
Home Page: https://nextpyp.app/
cryo-et,A curated list of awesome computational cryo-ET methods.
User: phonchi
cryo-et,Plugin to run MemBrain software within Scipion
Organization: scipion-em
Home Page: https://github.com/teamtomo/membrain-seg
cryo-et,Some scripts to facilitate subtomogram-averaging workflows.
Organization: tomotools
cryo-et,Subtomogram averaging tutorials
Organization: wan-lab-vanderbilt
Home Page: https://subtomo.readthedocs.io
cryo-et,MATLAB scripts to analyze polysomes formed by ribosomes based on their coordinates and rotations.
User: xueliang4906
cryo-et,Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (convolutional neural networks).
Organization: zaugggroup
cryo-et,A tool reading IMOD points, obtaining particles' info and generating .star file for RELION
User: zhenhuanglab
cryo-et,A tool converting DYNAMO table files(.tbl) to RELION star files(.star)
User: zhenhuanglab
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