Topic: mutation-analysis Goto Github
Some thing interesting about mutation-analysis
Some thing interesting about mutation-analysis
mutation-analysis,Multi-class classifier for DNA genetic mutations.
User: ajnavneet
mutation-analysis,Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and non-clustered groups on a sample-dependent basis.
Organization: alexandrovlab
mutation-analysis,SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
Organization: alexandrovlab
mutation-analysis,An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
Organization: alexandrovlab
mutation-analysis,SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
Organization: alexandrovlab
mutation-analysis,R wrapper for utilizing the SigProfilerMatrixGenerator framework
Organization: alexandrovlab
mutation-analysis,SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with other SigProfiler tools.
Organization: alexandrovlab
mutation-analysis,An R wrapper for running the SigProfilerPlotting framework
Organization: alexandrovlab
mutation-analysis,SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA replication, and DNA transcription on the activities of different mutational processes. SigProfilerTopography elucidates the unique topographical characteristics of mutational signatures.
Organization: alexandrovlab
mutation-analysis,Faster Mutation Analysis with MeMu
User: ali-ghanbari
mutation-analysis,Analyzing the mutations in different COVID-19 strains and studying how these mutations influence the severity of the infections.
User: anushk4
mutation-analysis,Generates a Dextool Mutate vs LCOV side by side presentation
User: christoffer-nylen
mutation-analysis,Unofficial VSCode extension of 'Stryker Mutator' for hunting mutants hiding in our codebase (currently, it supports .NET)
Organization: datagone
Home Page: https://marketplace.visualstudio.com/items?itemName=datagone.vscode-stryker-mutator
mutation-analysis,Stochastic Epimutation Finder
User: drake69
mutation-analysis,Mutation analysis tool for Coq verification projects
Organization: engineeringsoftware
Home Page: https://cozy.ece.utexas.edu/mcoq/
mutation-analysis,A simple GUI that allows users to check whether mutations from a SARS-CoV-2 genome best fit a mutational distribution of genomes derived from global, chronic, or deer infections.
User: eringill
Home Page: https://eringill.shinyapps.io/covid_mutation_distributions/
mutation-analysis,Term project for the Computational Biology (ENS210) course in Sabancฤฑ University.
User: gorkemkose
mutation-analysis,Utility Java program to perform mutation-analysis
Organization: gzoltar
mutation-analysis,The Simulink Model Mutation Testing project provides a framework for generating mutants, and CSV file as an output. It utilizes the MATLAB environment to load the model, apply mutations, and collect outputs.
User: haliliceylan
mutation-analysis,State of the art mutation testing system for the JVM
User: hcoles
mutation-analysis,Humbug is a Mutation Testing framework for PHP to measure the real effectiveness of your test suites and assist in their improvement. It eats Code Coverage for breakfast.
Organization: humbug
mutation-analysis,Interactive Protein Sequence VIsualization/Viewer - Interactive Circos
User: ibrahimtanyalcin
Home Page: http://i-pv.org/
mutation-analysis,Homebrew tap for https://infection.github.io/
Organization: infection
mutation-analysis,PHP Mutation Testing library
Organization: infection
Home Page: https://infection.github.io
mutation-analysis,Infection Playground - online tool to try Infection right in your browser.
Organization: infection
Home Page: https://infection-php.dev
mutation-analysis,Tool for mutation testing of C programs
User: magsilva
mutation-analysis,Python script for detecting mutations in aligned reads (.bam |.sam) e.g. from RNA base conversion techniques such as TimeLapse, SLAM-seq, TUC-seq
User: mashin6
mutation-analysis,Practical mutation testing and fault injection for C and C++
Organization: mull-project
Home Page: https://mull.readthedocs.io
mutation-analysis,Mutation Detection in Lung Cancer Cell Lines using CNNs
User: ninadakolekar
mutation-analysis,BAMdelbee is a novel tool for discovering homozygous deletions in Whole-exome-sequencing (WES) and whole-genome-sequencing (WGS) data. WES or WGS samples generated by the same method produce BAM files with similar alignment coverage across the genome. BAMdelbee locates homozygous deletions by pinpointing regions covered in all samples but the ones in question. We hereby demonstrate how our application can spot homozygous deletions absent from VCF files for being too vast, yet undetectable by chromosomal microarrays (CMA) for being too small. The application is freely available on our website and can run on a common laptop. Therefore, we recommend integrating it into WES and WGS interpretation pipelines for recessive diseases.
User: noam-hadar
mutation-analysis,Generate a rich feature space describing all possible mutations in a given protein sequence (+ structure)
User: ojcharles
mutation-analysis,Collated scripts for FunVar-TRACERx gene duplication, diversity and neofun.
User: paulashford
mutation-analysis,Judy-generator tool experiment for master-thesis
User: paweltatarczuk
mutation-analysis,An efficient mutation testing tool written in Kotlin for Java Maven projects
User: phantran
mutation-analysis,Mutation Analysis of perceptions of people towards GMOs
User: rashmisangwan
mutation-analysis,Another needleplot for mutation data, used by ActiveDriverDB
Organization: reimandlab
mutation-analysis,Experimental Evaluation and Comparison of Java Mutation Tools
User: scoban
mutation-analysis,A project that will predict the mutation score of methods and classes using a support vector machine and source code metrics
Organization: seer-lab
Home Page: https://www.seerlab.ca
mutation-analysis,Descartes supports developers to improve their test suites by reporting weak spots in covered code
Organization: stamp-project
Home Page: https://hal.archives-ouvertes.fr/hal-01870976/document
mutation-analysis,Maven plugin to handle multi module projects for PiTest
Organization: stamp-project
mutation-analysis,Student plagiarism detection tool based on CCD algorithms
Organization: studyfair
Home Page: https://studyfair.online
mutation-analysis,Introduction to Mutation Testing
User: sualeh
mutation-analysis,things behind nectarmutation.org
User: sung
Home Page: http://nectarmutation.org/main
mutation-analysis,A Language/Platform agnostic Mutation & Analysis Language.
User: talalzone
mutation-analysis,Analyzing TCGA cohorts and multiomic data in R
User: tarsus-lam
mutation-analysis,Mutation testing resources: how to make better code by introducing bugs
User: theofidry
mutation-analysis,LLVM Mutation Artisan (MART) is a configurable mutation testing framework based on LLVM
User: thierry-tct
Home Page: https://thierry-tct.github.io/mart
mutation-analysis,WOLAND is a multiplatform tool to analyze point mutation patterns using resequencing data from any organism or cell. It is implemented as a Perl and R tool using as inputs filtered unannotated or annotated SNV lists, combined with its correspondent genome sequences.
User: tiagoantonio
Home Page: http://github.com/tiagoantonio/woland
mutation-analysis,Automated analysis tool for mutations in promoters, transcription factor binding sites, coding regions and protein domains in the context of gene regulatory networks.
Organization: uds-helms
Home Page: http://service.bioinformatik.uni-saarland.de/mutanet/
mutation-analysis,Set of programs for assessing the mutations from a set of amino acid sequences.
User: varunchakrakodi
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